Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h12
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.88 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 212 AQQVQSQAQPHHVAGRLHARGANERDRLHYD 120
           +Q ++ Q +     G LH+  +   DRLHY+
Sbjct: 686 SQYIREQTESDDKEGYLHSVVSGALDRLHYE 716


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 421 AQCPPCGWPAAPFRGARFRN 480
           A   PC W A P++G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 421 AQCPPCGWPAAPFRGARFRN 480
           A   PC W A P++G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 421 AQCPPCGWPAAPFRGARFRN 480
           A   PC W A P++G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 61  HIKIFIARCANCSCA 105
           H  ++  RCANC+ A
Sbjct: 39  HSNVYQYRCANCTYA 53


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 233 QSKGSHTAQQVQSQAQPHH 177
           Q +  H AQ +    Q HH
Sbjct: 793 QQRHQHAAQMIYGHQQSHH 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,728
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)