Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h10
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0320 + 42708082-42708324,42708359-42708409,42708987-427091...    28   3.1  
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442...    27   9.5  

>01_07_0320 +
           42708082-42708324,42708359-42708409,42708987-42709122,
           42709226-42709275,42709978-42710066,42710398-42710434,
           42710435-42710471,42710588-42710733,42711099-42711241,
           42711735-42711768,42711962-42712064,42712236-42712381,
           42712982-42713323,42713416-42713656,42713733-42713788,
           42713852-42713920
          Length = 640

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 168 CQYVRC-RIEVLHV-GSRKTQWIDVSNIFVLFNVVITNFSCMLEIKSRDDFLMNF 10
           C++V   R++ LH+ G +   +  +S +  + NV ITNF C+ E    D  L NF
Sbjct: 339 CRHVMAFRMQELHLDGCKGIGYAAMSQL--MSNVNITNFLCLRETTLTDGALCNF 391


>03_01_0601 +
           4423831-4424115,4424278-4424406,4424615-4424779,
           4424925-4425230,4425387-4425448,4425776-4426145,
           4426427-4426555,4427233-4427397,4427534-4427839,
           4427928-4428068
          Length = 685

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 195 NLCDVTSVRCQYVRCRIEVLHVGSRKTQWIDVSNIFVLFNV 73
           ++ DV S+   + RC   V HV +    W+   +IF+  NV
Sbjct: 59  DVADVESLAAAFDRCDA-VFHVAAAVEAWLPDPSIFITVNV 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,200,526
Number of Sequences: 37544
Number of extensions: 169031
Number of successful extensions: 200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)