Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h10
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm rec...    27   8.6  
AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical
           protein H02I12.3 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 455 IDLLSMSWALKILPFMIVCIRDC 387
           +   S+SW L +L F+IVC   C
Sbjct: 296 VSTFSLSWGLCVLYFVIVCEEGC 318


>Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical
           protein C34B4.4 protein.
          Length = 538

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 QCKLMQFTIYKYVRLRKCLKLLKYT 323
           +CK +    YK V   KCL+++ YT
Sbjct: 40  ECKQVHNRNYKLVTCNKCLRIISYT 64


>AF039050-10|AAC47933.2|  362|Caenorhabditis elegans Seven tm
           receptor protein 82 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 279 KYVRLRKCLKLLKYTH*IMFCCRLNSLAFIFLHRNLAISYTNYHKW*YFKSPRH 440
           ++V  +   ++L  T   +F C    L+  F++R L+++  ++ +  YFK  RH
Sbjct: 79  QFVEYQLLSQILIVTFCSIFACMQVVLSTQFIYRYLSVASFHFLRERYFKGKRH 132


>AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical
           protein F27B3.5 protein.
          Length = 787

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 49  HTAEIGYYNIKQNKNITNIDPLCFP 123
           HT E     IK+N + TN++PL  P
Sbjct: 728 HTVEKNIQKIKRNDDFTNLEPLPEP 752


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
            protein C09E7.7 protein.
          Length = 995

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 49   HTAEIGYYNIKQNKNITNIDPLCFP 123
            HT E     IK+N + TN++PL  P
Sbjct: 935  HTVEKNIQKIKRNDDFTNLEPLPEP 959


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,705,507
Number of Sequences: 27780
Number of extensions: 183508
Number of successful extensions: 315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)