Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10h08
(460 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-1421|AAM71028.1| 155|Drosophila melanogaster CG8857-PC... 240 7e-64
AE013599-1420|AAF58552.1| 155|Drosophila melanogaster CG8857-PA... 240 7e-64
AE013599-1422|AAM71029.1| 154|Drosophila melanogaster CG8857-PB... 225 2e-59
AY122128-1|AAM52640.1| 1188|Drosophila melanogaster GH22749p pro... 31 0.56
AE014296-2482|AAN11790.1| 1188|Drosophila melanogaster CG12316-P... 31 0.56
AE014296-2481|AAF49660.1| 1188|Drosophila melanogaster CG12316-P... 31 0.56
M31162-1|AAA28859.1| 448|Drosophila melanogaster protein ( D.me... 28 5.3
AY089622-1|AAL90360.1| 448|Drosophila melanogaster RE35772p pro... 28 5.3
AY061501-1|AAL29049.1| 448|Drosophila melanogaster LD46049p pro... 28 5.3
AE014134-1210|AAF52471.1| 448|Drosophila melanogaster CG8749-PA... 28 5.3
AL021086-2|CAA15933.1| 995|Drosophila melanogaster EG:86E4.2 pr... 27 9.2
>AE013599-1421|AAM71028.1| 155|Drosophila melanogaster CG8857-PC,
isoform C protein.
Length = 155
Score = 240 bits (587), Expect = 7e-64
Identities = 117/149 (78%), Positives = 131/149 (87%), Gaps = 3/149 (2%)
Frame = -3
Query: 440 MADQTEKAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 270
MADQ E+AFQKQ V LNRK G K+K +R ++VGLGFKTPREAI+GTYIDKKCP+T
Sbjct: 1 MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWT 60
Query: 269 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 90
G+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE G
Sbjct: 61 GDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHG 120
Query: 89 DIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
DIVTIGECRPLSKTVRFNVLKVSKG+G+K
Sbjct: 121 DIVTIGECRPLSKTVRFNVLKVSKGQGAK 149
>AE013599-1420|AAF58552.1| 155|Drosophila melanogaster CG8857-PA,
isoform A protein.
Length = 155
Score = 240 bits (587), Expect = 7e-64
Identities = 117/149 (78%), Positives = 131/149 (87%), Gaps = 3/149 (2%)
Frame = -3
Query: 440 MADQTEKAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 270
MADQ E+AFQKQ V LNRK G K+K +R ++VGLGFKTPREAI+GTYIDKKCP+T
Sbjct: 1 MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWT 60
Query: 269 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 90
G+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE G
Sbjct: 61 GDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHG 120
Query: 89 DIVTIGECRPLSKTVRFNVLKVSKGKGSK 3
DIVTIGECRPLSKTVRFNVLKVSKG+G+K
Sbjct: 121 DIVTIGECRPLSKTVRFNVLKVSKGQGAK 149
>AE013599-1422|AAM71029.1| 154|Drosophila melanogaster CG8857-PB,
isoform B protein.
Length = 154
Score = 225 bits (551), Expect = 2e-59
Identities = 109/148 (73%), Positives = 127/148 (85%), Gaps = 2/148 (1%)
Frame = -3
Query: 440 MADQ-TEKAFQKQ-ATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 267
MADQ TE++F+KQ A V + RK +K R ++ +GLGF+ P EAI+GTYIDKKCP+TG
Sbjct: 1 MADQQTERSFRKQHAVVVVRRKSPNLKKRPRFYRQIGLGFRAPAEAIDGTYIDKKCPWTG 60
Query: 266 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 87
+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE GD
Sbjct: 61 DVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGD 120
Query: 86 IVTIGECRPLSKTVRFNVLKVSKGKGSK 3
IVTIGECRPLSKTVRFNVLKVSKG+G+K
Sbjct: 121 IVTIGECRPLSKTVRFNVLKVSKGQGAK 148
>AY122128-1|AAM52640.1| 1188|Drosophila melanogaster GH22749p
protein.
Length = 1188
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 260 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 120
S++ RI+ + M+ R++ I+ Y HYLPK+ R + HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298
>AE014296-2482|AAN11790.1| 1188|Drosophila melanogaster CG12316-PB,
isoform B protein.
Length = 1188
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 260 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 120
S++ RI+ + M+ R++ I+ Y HYLPK+ R + HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298
>AE014296-2481|AAF49660.1| 1188|Drosophila melanogaster CG12316-PA,
isoform A protein.
Length = 1188
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 260 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 120
S++ RI+ + M+ R++ I+ Y HYLPK+ R + HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298
>M31162-1|AAA28859.1| 448|Drosophila melanogaster protein (
D.melanogaster U1 70Ksmall nuclear ribonucleoprotein
gene, complete cds. ).
Length = 448
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/86 (26%), Positives = 33/86 (38%)
Frame = -2
Query: 447 KQNGGSDRESVSETGHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GYLH*QEVSLHW 268
K+ RE S R ++ER E G S + R + + D + + V +
Sbjct: 323 KKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGY 382
Query: 267 QRFDXXXXXXXXRSEDEDAENYRDPP 190
FD +DED E YR PP
Sbjct: 383 PTFDYQNATIKREIDDEDEEKYRPPP 408
>AY089622-1|AAL90360.1| 448|Drosophila melanogaster RE35772p
protein.
Length = 448
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/86 (26%), Positives = 33/86 (38%)
Frame = -2
Query: 447 KQNGGSDRESVSETGHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GYLH*QEVSLHW 268
K+ RE S R ++ER E G S + R + + D + + V +
Sbjct: 323 KKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGY 382
Query: 267 QRFDXXXXXXXXRSEDEDAENYRDPP 190
FD +DED E YR PP
Sbjct: 383 PTFDYQNATIKREIDDEDEEKYRPPP 408
>AY061501-1|AAL29049.1| 448|Drosophila melanogaster LD46049p
protein.
Length = 448
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/86 (26%), Positives = 33/86 (38%)
Frame = -2
Query: 447 KQNGGSDRESVSETGHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GYLH*QEVSLHW 268
K+ RE S R ++ER E G S + R + + D + + V +
Sbjct: 323 KKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGY 382
Query: 267 QRFDXXXXXXXXRSEDEDAENYRDPP 190
FD +DED E YR PP
Sbjct: 383 PTFDYQNATIKREIDDEDEEKYRPPP 408
>AE014134-1210|AAF52471.1| 448|Drosophila melanogaster CG8749-PA
protein.
Length = 448
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/86 (26%), Positives = 33/86 (38%)
Frame = -2
Query: 447 KQNGGSDRESVSETGHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GYLH*QEVSLHW 268
K+ RE S R ++ER E G S + R + + D + + V +
Sbjct: 323 KKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGY 382
Query: 267 QRFDXXXXXXXXRSEDEDAENYRDPP 190
FD +DED E YR PP
Sbjct: 383 PTFDYQNATIKREIDDEDEEKYRPPP 408
>AL021086-2|CAA15933.1| 995|Drosophila melanogaster EG:86E4.2
protein.
Length = 995
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 368 RKDMRHHKNVGLGFKTPREAIEGTYIDKKC 279
RK++ HH G T R++ GT+I K+C
Sbjct: 953 RKELPHHLFACTGRSTLRDSPIGTFIRKRC 982
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,271,271
Number of Sequences: 53049
Number of extensions: 433821
Number of successful extensions: 954
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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