Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h06
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    33   0.035
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    29   0.56 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    28   1.3  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.0  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    26   5.2  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   6.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   9.2  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = -1

Query: 764 CAKNEKLLNKLESSSYNKSNMDQLIAIVNFLEK---KNINYILNVMPVMQDERKMSKRKK 594
           C  N+++  +L+  +  + N+D L+A VNFL K    N   ++ V   M +    +KR +
Sbjct: 140 CDCNDEINERLKKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQ 199

Query: 593 KVINNN 576
           +++++N
Sbjct: 200 QLLDHN 205


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 13/68 (19%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = -1

Query: 752 EKLLNKLESSSYN-KSNMDQLIAIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKVIN 582
           E  +   +S S++ +    +++A++N  ++  ++IN++ +   +  ++ K +  K++V+ 
Sbjct: 421 EDEVTNFDSRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLR 480

Query: 581 NNKYILFN 558
             K +LF+
Sbjct: 481 RIKQLLFS 488


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -1

Query: 680  NFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPA 510
            + L +K  N   ++  V + + K + +K  V+ N   IL NS   W   IK+P   S P 
Sbjct: 902  SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960

Query: 509  MWDLVKNTPELADFV 465
              D   N  +L   +
Sbjct: 961  SMDFTSNDEQLVQLL 975


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 131 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 36
           EY+P SI G+K  K  +  K+   IKN +  T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 573 FIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFFQEIYNSN*LVHVGFVVRARFQFIQQLF 752
           FI+    LL F  F       H V  +  V FFQ ++ S  L + G  +   F  +Q+ +
Sbjct: 172 FIIYFVTLLIFTIFQVGGGCAHNVWTLAIVRFFQGVFGSTPLANAGGTISDLFTPVQRTY 231

Query: 753 I---FCT 764
           +   FCT
Sbjct: 232 VLPGFCT 238


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 635  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 543
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 755 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 648
           NEK ++ + +S  N+S + QL A +  L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 624 LHDRHYVEDIVNVLFF 671
           L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +1

Query: 127 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 306
           YSV++ +T   S+TVLN +  +   S +N+S+ +  S        ++ + + NS   ++ 
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650

Query: 307 ISQLSFNSAKFALVSTAV 360
            S L  NS+     STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 608 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 477
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -1

Query: 344 NANLAELKESCEMRDKLYSEFYS--LLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFK 171
           NA +  +K+S      +   F    ++   FNNN+  L   +     + D + ++++K  
Sbjct: 523 NAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRL 582

Query: 170 TVALKLPVAPSTTEYVPTSISGSK 99
                L  +P+   YV   +SG++
Sbjct: 583 GKKATLRKSPAKLYYVHLKLSGNE 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,124
Number of Sequences: 5004
Number of extensions: 67587
Number of successful extensions: 267
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)