Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h06
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    32   0.53 
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    31   0.70 
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    31   1.2  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    31   1.2  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    29   4.9  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   6.5  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   6.5  
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    28   6.5  
AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 302 DKLYSEFYSLLNE--TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTT 132
           D+  +E Y+ LN    F +NV  L+S I + +    D I +++ K     ++LP   +TT
Sbjct: 260 DRTINEKYAGLNPGVEFISNVDRLISDINESLKYVSDKIERDVRKIPEDVVELPTTTTTT 319

Query: 131 EYVPTSISGSKK 96
           E  P ++ G  +
Sbjct: 320 EQPPRTVLGCSR 331


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
 Frame = -1

Query: 335 LAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVA-- 162
           LA +K+  +  D+L +     LN    ++ AP +  +++ + ++ ++  + A     A  
Sbjct: 33  LALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYMPASTAPTSASATA 92

Query: 161 --LKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 24
             LK   AP+     PT+  G +K  +S  A +  S   R+  +  P+
Sbjct: 93  PDLKKEKAPAEKPSKPTAPPGVQKSSSSPSASKAESRPLRKRISPPPS 140


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 344 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 216
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 344 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 216
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 344 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 216
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 516 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 641
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +3

Query: 435 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 596
           T LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245

Query: 597 LAFGHFAFVLHD 632
              G FA VL +
Sbjct: 246 TNSGPFASVLRE 257


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 647  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 486
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 70  CLAGTEFFLFLLPLIEVGTYSVV 138
           C AG   FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 266 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 424
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 414  DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 256
            ++  F+R   NS E++ TD      +     R LRNA   +   L  +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/66 (21%), Positives = 32/66 (48%)
 Frame = -1

Query: 686 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAM 507
           I  F++ +N+  + N   V++ E +    +  ++ NN Y    +    + +P + + P +
Sbjct: 67  IARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYV 123

Query: 506 WDLVKN 489
           WD + N
Sbjct: 124 WDTINN 129


>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 758 KNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 651
           KNE LL+ L+  SYN++   Q++ I     K N NY
Sbjct: 38  KNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 16  IKSVGAAVVLRRFFIEDRCLAGTEFFLFLLPLIEVGTYSVVDGATGNLSATVLNL 180
           I+ V A  +L  FF       G  FF+FL+P++ +  + +V G   +++  +L L
Sbjct: 58  IQIVNAIYILYFFFTLFMAFFGATFFVFLIPVLLI-VFPLVTGLMHDVNEFLLGL 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,484
Number of Sequences: 27780
Number of extensions: 387122
Number of successful extensions: 1255
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)