Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h05
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   104   3e-24
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    24   6.3  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    24   6.3  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  104 bits (250), Expect = 3e-24
 Identities = 48/95 (50%), Positives = 68/95 (71%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MKF++ VT         HF APS + RVLMS+P SK LR+ + + S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGATA 4
             KG++ GK+  VYRKK ++ IER+ REKANGA+A
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASA 94


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 207 VLMSSPPSKXLRQXFXVXSMPIRKDDEVQVV 115
           +  ++PP K  R    +  MP+R D  ++ +
Sbjct: 198 IFSNTPPLKRFRGDAGMTQMPLRSDTSIESI 228


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 16  IGLF--SLNPLNVYXXLFTIHLHHFANLLAFVXSTXNLNFIVF 138
           I LF  ++N  N++   F+   +H AN + F  +  N  +++F
Sbjct: 181 ISLFIATINCENIFWKAFSPTTYHIANGVQFEGAVINFVYVMF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,634
Number of Sequences: 5004
Number of extensions: 12671
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)