Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h05
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          107   2e-24
12_01_0323 - 2459854-2460306                                          107   2e-24
11_01_0317 - 2365493-2365786,2365825-2365953                           71   1e-13
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898...    27   3.1  
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888...    25   9.4  
02_05_0114 + 25958834-25961296                                         25   9.4  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  107 bits (257), Expect = 2e-24
 Identities = 53/94 (56%), Positives = 68/94 (72%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MK N +VT         HF+APS + RVLMS+  S  LR  + V S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGAT 7
            YKG++ GKV+QVYR++ V+++ERI REK NG+T
Sbjct: 61  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  107 bits (256), Expect = 2e-24
 Identities = 53/94 (56%), Positives = 68/94 (72%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MK N +VT         HF+APS + RVLMS+  S  LR  + V S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGAT 7
            YKG++ GKV+QVYR++ V+++ERI REK NG+T
Sbjct: 61  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 42/94 (44%), Positives = 56/94 (59%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MK N +VT         HF+APS + RVLMS+  S  LR  +              VVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKY-------------NVVRG 47

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGAT 7
            YKG++ GKV+QVYR++ V+++ERI REK NG+T
Sbjct: 48  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 80


>06_03_1161 -
           28089177-28089359,28089473-28089700,28089776-28089814,
           28090681-28090737,28090924-28091046
          Length = 209

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 150 MPIRKDDEVQVVRGXYKGQQVGKVMQVYRKKXVVYIE 40
           M +R  D VQV+ G  KG +VG+V ++++    V ++
Sbjct: 93  MHVRIGDTVQVIAGREKG-KVGEVTRLFKHNSTVIVK 128


>11_06_0621 +
           25587476-25587604,25588230-25588423,25588800-25588874,
           25589434-25591852
          Length = 938

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 57  TFYDTPASLCQPVGLCXVHXQPELHRLCE*AWXLXXXFVLXP*TGERTSALAXY 218
           T YD  A++C   G+C +   P +       W L   F+    TGE    LA Y
Sbjct: 284 TCYDVQATICLFSGICRLGVVPSVW-----TWNLLLKFIAE--TGEYEMVLAAY 330


>02_05_0114 + 25958834-25961296
          Length = 820

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 57  TFYDTPASLCQPVGLCXVHXQPELHRLCE*AWXLXXXFVLXP*TGERTSALAXY 218
           T YD  A++C   G+C +   P +       W L   F+    TGE    LA Y
Sbjct: 166 TCYDVQATICLFSGICRLGVVPSVW-----TWNLLLKFIAE--TGEYEMVLAAY 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,221,929
Number of Sequences: 37544
Number of extensions: 88901
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)