Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h05
         (316 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071133-1|AAL48755.1|  149|Drosophila melanogaster RE17611p pro...   122   1e-28
AE014296-3077|AAF49215.1|  149|Drosophila melanogaster CG6846-PA...   122   1e-28
AE014297-1024|AAF54439.1| 1080|Drosophila melanogaster CG16908-P...    27   6.7  
AE013599-399|AAM68891.2|  409|Drosophila melanogaster CG11112-PB...    26   8.8  

>AY071133-1|AAL48755.1|  149|Drosophila melanogaster RE17611p
           protein.
          Length = 149

 Score =  122 bits (293), Expect = 1e-28
 Identities = 60/96 (62%), Positives = 69/96 (71%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MK N  V+        RHF APSHI R LMS+P SK LRQ + V SMPIR+DDEVQV+RG
Sbjct: 1   MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIRRDDEVQVIRG 60

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGATAY 1
            +KG QVGKV+Q YRKK VVY+E+IQRE ANG   Y
Sbjct: 61  HFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVY 96


>AE014296-3077|AAF49215.1|  149|Drosophila melanogaster CG6846-PA
           protein.
          Length = 149

 Score =  122 bits (293), Expect = 1e-28
 Identities = 60/96 (62%), Positives = 69/96 (71%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MK N  V+        RHF APSHI R LMS+P SK LRQ + V SMPIR+DDEVQV+RG
Sbjct: 1   MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIRRDDEVQVIRG 60

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGATAY 1
            +KG QVGKV+Q YRKK VVY+E+IQRE ANG   Y
Sbjct: 61  HFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVY 96


>AE014297-1024|AAF54439.1| 1080|Drosophila melanogaster CG16908-PA
           protein.
          Length = 1080

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = -1

Query: 313 CRXGEEXXNE---VQQAGDFXKK--EXQEEAFQCSFTYXAS 206
           C   EE  NE   ++  GD  +K  +  EEA QC FT+ AS
Sbjct: 239 CIMFEETTNEFIKMRYDGDAFRKLFKNNEEAHQCDFTFFAS 279


>AE013599-399|AAM68891.2|  409|Drosophila melanogaster CG11112-PB,
           isoform B protein.
          Length = 409

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 74  CITLPTCWPLXCP 112
           C   PTCWP  CP
Sbjct: 331 CTLPPTCWPPYCP 343


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,214
Number of Sequences: 53049
Number of extensions: 155202
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 631882260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)