Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h05
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    92   9e-20
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    92   9e-20
Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...    92   9e-20
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    28   1.2  

>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 45/96 (46%), Positives = 64/96 (66%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MK N  V+         HF+APSH  R +MS+P +K LR    + ++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGATAY 1
            +KG   G+V++ YRKK V++I++I REKANG+T +
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVH 95


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 45/96 (46%), Positives = 64/96 (66%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MK N  V+         HF+APSH  R +MS+P +K LR    + ++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGATAY 1
            +KG   G+V++ YRKK V++I++I REKANG+T +
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVH 95


>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 45/96 (46%), Positives = 64/96 (66%)
 Frame = -2

Query: 288 MKFNKQVTXXXXXXXXRHFSAPSHIXRVLMSSPPSKXLRQXFXVXSMPIRKDDEVQVVRG 109
           MK N  V+         HF+APSH  R +MS+P +K LR    + ++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 108 XYKGQQVGKVMQVYRKKXVVYIERIQREKANGATAY 1
            +KG   G+V++ YRKK V++I++I REKANG+T +
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVH 95


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  WPFLFESSQCIXXTFYDTPASLC 86
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  WPFLFESSQCIXXTFYDTPASLC 86
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  WPFLFESSQCIXXTFYDTPASLC 86
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  WPFLFESSQCIXXTFYDTPASLC 86
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,198,280
Number of Sequences: 27780
Number of extensions: 74053
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)