Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h04
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   120   6e-29
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   118   2e-28
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   0.78 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   2.4  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   4.2  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    24   5.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    24   5.5  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   5.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   5.5  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    24   5.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    23   9.6  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   9.6  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   9.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    23   9.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    23   9.6  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    23   9.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    23   9.6  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    23   9.6  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  120 bits (288), Expect = 6e-29
 Identities = 53/84 (63%), Positives = 61/84 (72%)
 Frame = -3

Query: 266 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 87
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 86  XXRMRHLKIVRRRFRNGFKEGKPT 15
             RM +LK V R F+NGF+ GKPT
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  118 bits (284), Expect = 2e-28
 Identities = 52/83 (62%), Positives = 60/83 (72%)
 Frame = -3

Query: 266 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 87
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 86  XXRMRHLKIVRRRFRNGFKEGKP 18
             RM +LK V R F+NGF+ GKP
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKP 83


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 58  TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 171
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -3

Query: 230 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 147
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 167 ILIFECDMTIYHIFCITYGSYFGAYRSLRYPSSS 268
           +LI+ CD  +++  CI + S +  + S++    S
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 160 WAHFDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 267
           W+H D     D   H LHN W    R  K +  F++
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 295 ISFGLSRVTR*RRVPQASVSAEIRPIRYAEDVVDRHITF 179
           +  G S+  +   +PQ S+ +      Y ED++D +++F
Sbjct: 691 VKIGNSQYLQKVGIPQGSILSSFLCHFYMEDLIDEYLSF 729


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 162 PMWISCSKITILPLVSEG*AQEDYW 88
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 239  KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 147
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 260 KGTSSFGKRRNKTHTLCRRCGRSS 189
           KGTS     R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 226 LFRRLPKLEVPFVILSLLTIRKR 294
           L  RLP + +PF++  L TI  R
Sbjct: 86  LVSRLPSIVLPFLVRRLTTIAGR 108


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 197 YHIFCITYGSYFGAYRSLRYPSS 265
           Y  FCI   S F    SL YP+S
Sbjct: 608 YFQFCIESDSKFDEGTSLEYPNS 630


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 173 IFECDMTIYHIFCITYGSYFGAYRSLRYPSSSCH 274
           +F    ++Y    I    YF  +  LRY S S H
Sbjct: 4   LFILSCSVYDFSSILLHQYFTQFFVLRYASPSMH 37


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 186 SHSKIKMRPMWISCSKITILP 124
           SHS   MRP+ I  + +T+ P
Sbjct: 697 SHSTFTMRPLSIERTTLTVTP 717


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 287 RIVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQ 177
           +++K  ++T    +FGK+    H L   CG    H Q
Sbjct: 47  KVLKYFRITGCLINFGKQPANDHHLWGHCGARLKHTQ 83


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 193 DLPHLLHNVWVLFRRLPKLEVPF-VILSLLTIRKR 294
           ++P L H++W++  +  KL + F  ILS + I  +
Sbjct: 710 EIPSLFHSIWIMTGKGLKLWLSFSEILSSVLINTK 744


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -1

Query: 274 VTR*RRVPQASVSAEIRPIRYAEDVVDRHITFKNQNAPNVDILQQNYD 131
           +TR   +PQ   S   RP+   E +VD  IT  N N   V       D
Sbjct: 337 LTRPIEIPQ-HFSPIARPLTSQEAIVDMDITSNNINLSPVSHFSNGLD 383


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 99  EDYWNWPHASFEDCQEAL 46
           +D W+W H S    +E+L
Sbjct: 442 KDLWSWIHLSHRQSEESL 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,588
Number of Sequences: 5004
Number of extensions: 22425
Number of successful extensions: 50
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)