Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h02
         (354 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061320-1|AAL28868.1|   65|Drosophila melanogaster LD23674p pro...    98   2e-21
AE014298-1341|AAF46503.2|   65|Drosophila melanogaster CG2998-PA...    98   2e-21
AE014297-4512|AAF56992.1|   64|Drosophila melanogaster CG15527-P...    88   3e-18
BT030166-1|ABN49305.1|   73|Drosophila melanogaster IP17744p pro...    51   5e-07
BT029933-1|ABM92807.1|  575|Drosophila melanogaster IP14249p pro...    29   1.3  
AE014134-2641|AAN10914.1| 1931|Drosophila melanogaster CG18109-P...    29   1.3  
AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa cent...    27   9.1  
AE014298-1092|AAF46300.3|  763|Drosophila melanogaster CG1530-PA...    27   9.1  
AE014296-2465|AAZ83989.1| 2897|Drosophila melanogaster CG33957-P...    27   9.1  

>AY061320-1|AAL28868.1|   65|Drosophila melanogaster LD23674p
           protein.
          Length = 65

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 46/53 (86%), Positives = 50/53 (94%)
 Frame = -3

Query: 286 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 128
           MDKP V ARV+KVLGRTGSQGQCTQVKVEF+GE +RQIIRNVKGPVR+GDILT
Sbjct: 1   MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILT 53


>AE014298-1341|AAF46503.2|   65|Drosophila melanogaster CG2998-PA
           protein.
          Length = 65

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 46/53 (86%), Positives = 50/53 (94%)
 Frame = -3

Query: 286 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 128
           MDKP V ARV+KVLGRTGSQGQCTQVKVEF+GE +RQIIRNVKGPVR+GDILT
Sbjct: 1   MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILT 53


>AE014297-4512|AAF56992.1|   64|Drosophila melanogaster CG15527-PA
           protein.
          Length = 64

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 42/53 (79%), Positives = 48/53 (90%)
 Frame = -3

Query: 286 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 128
           MDKP   ARVV++LGRTGSQGQCTQV+VEF+G+ SRQIIRNVKGPVR GDIL+
Sbjct: 1   MDKPQY-ARVVEILGRTGSQGQCTQVRVEFLGDQSRQIIRNVKGPVRVGDILS 52


>BT030166-1|ABN49305.1|   73|Drosophila melanogaster IP17744p
           protein.
          Length = 73

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 21/44 (47%), Positives = 32/44 (72%)
 Frame = -3

Query: 265 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 134
           ARV+K+L R G++G  T+V+V+ + +   Q +R VKGPVR GD+
Sbjct: 7   ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50


>BT029933-1|ABM92807.1|  575|Drosophila melanogaster IP14249p
           protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 203 DLHLSTLALRTSTAEYFHDTSKNVGFI 283
           DLH+  L L  S   + HD  K+V FI
Sbjct: 32  DLHMGILELSVSLGNFTHDVEKSVNFI 58


>AE014134-2641|AAN10914.1| 1931|Drosophila melanogaster CG18109-PA
           protein.
          Length = 1931

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 203 DLHLSTLALRTSTAEYFHDTSKNVGFI 283
           DLH+  L L  S   + HD  K+V FI
Sbjct: 32  DLHMGILELSVSLGNFTHDVEKSVNFI 58


>AY373570-1|AAR20251.1| 2726|Drosophila melanogaster 309 kDa
            centrosomal protein protein.
          Length = 2726

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -3

Query: 298  LQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 131
            L+A +DK  VL  ++  L    +Q Q   +  E + E ++Q+   V   +RD DIL
Sbjct: 1442 LKASIDKIFVLREIISELE---TQVQTKALNEEVLAEKAQQLEEYVSLQMRDNDIL 1494


>AE014298-1092|AAF46300.3|  763|Drosophila melanogaster CG1530-PA
           protein.
          Length = 763

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 262 EQERWVYPFWLVISSLIQLTHVHQSWRV 345
           E E   YP W +IS L   TH H + ++
Sbjct: 623 ELEASAYPMWSIISHLQDGTHAHLAKKI 650


>AE014296-2465|AAZ83989.1| 2897|Drosophila melanogaster CG33957-PB,
            isoform B protein.
          Length = 2897

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -3

Query: 298  LQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 131
            L+A +DK  VL  ++  L    +Q Q   +  E + E ++Q+   V   +RD DIL
Sbjct: 1613 LKASIDKIFVLREIISELE---TQVQTKALNEEVLAEKAQQLEEYVSLQMRDNDIL 1665


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,438,221
Number of Sequences: 53049
Number of extensions: 288674
Number of successful extensions: 853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 859222404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)