Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h02
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   9.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 55  FTCTIYINLCVKLT 14
           FTC I   +C KLT
Sbjct: 636 FTCNIMDAICTKLT 649


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 176 LTAGLPNELDL 208
           L  GLPNEL L
Sbjct: 90  LVLGLPNELSL 100


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 237 VRPSTFTTRARTLGLSILACNIE 305
           VRP+TFT +     + + A  IE
Sbjct: 632 VRPNTFTDKVNLTRVDMYANMIE 654


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 232 NQYGRVLSRHEQERWV 279
           N  GRVLSR  Q R V
Sbjct: 112 NSVGRVLSRDVQVRAV 127


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 232 NQYGRVLSRHEQERWV 279
           N  GRVLSR  Q R V
Sbjct: 112 NSVGRVLSRDVQVRAV 127


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 205 PSLEYTGPENQYGRVLSRHEQ 267
           P     G +N YGR L  H Q
Sbjct: 199 PQQHGLGVQNGYGRHLPGHAQ 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,456
Number of Sequences: 438
Number of extensions: 1756
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)