Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h01
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...   116   1e-26
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    40   0.002
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    38   0.006
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    36   0.032
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    32   0.51 
AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U79157-1|AAC26982.1|  496|Caenorhabditis elegans splicing factor...    29   4.8  
AC024875-3|AAK29989.1|  496|Caenorhabditis elegans U2af splicing...    29   4.8  
AC024875-2|AAM44400.1|  471|Caenorhabditis elegans U2af splicing...    29   4.8  
AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing...    29   4.8  
Z70037-5|CAA93880.1|  648|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z49069-4|CAA88868.1|  648|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL034393-13|CAA22317.1|  340|Caenorhabditis elegans Hypothetical...    28   8.4  

>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score =  116 bits (280), Expect = 1e-26
 Identities = 58/86 (67%), Positives = 67/86 (77%)
 Frame = -3

Query: 664 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 485
           MKLVRFLMKLSHETV IELKNG+ V GTI GVDVAMNTHL+AV +T+KN+E ++L+TLSI
Sbjct: 1   MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60

Query: 484 RGNNIRYYXXXXXXXXXXXLIDDTPK 407
           RGNNIRY            LIDD P+
Sbjct: 61  RGNNIRYIILPDPLALDTLLIDDEPR 86


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -3

Query: 655 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 476
           ++ L +     VT+E   G V  G ++  +  MN  L    VT ++    QL+ + IRGN
Sbjct: 8   IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67

Query: 475 NIRY 464
            IR+
Sbjct: 68  KIRF 71


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 622 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRY 464
           VT+E   G V  G ++  +  MN  L    VT ++    QL+ + IRGN IR+
Sbjct: 5   VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRF 57


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 646 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETLSIRGNNI 470
           L    +  + +ELKNG   +G +   D  MN HL  V  T K+ ++  ++    +RG+ I
Sbjct: 8   LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67

Query: 469 RY 464
           +Y
Sbjct: 68  KY 69


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -3

Query: 664 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR--EELQLETL 491
           M    F   L  + V +ELKN   + GT+  VD  +N  L  + V+   R    + ++  
Sbjct: 1   MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60

Query: 490 SIRGNNIRY 464
            IRG+ +RY
Sbjct: 61  FIRGSVVRY 69


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = -3

Query: 673 SSRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 494
           S R     FL K+  + V ++L +G    G +  +D  MN  L+  +     + + +   
Sbjct: 2   SKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGD 61

Query: 493 LSIRGNNIRY 464
             IRGNN+ Y
Sbjct: 62  AFIRGNNVLY 71


>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 583 TITGVDVAMNTHLKAVKVTLKNREELQ 503
           T+ G++VA N H K  +   KNR  +Q
Sbjct: 179 TLKGIEVASNPHFKKTRAPTKNRAAIQ 205


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -3

Query: 622 VTIELKNGSVVHGTITGVDVAMNTHLKAV---KVTLKNREELQLETLSIRGNNI 470
           + + +KN   + GT+TG D  +N  L+ V   + T   +   +L+T+ + GN+I
Sbjct: 26  IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGNHI 79


>U79157-1|AAC26982.1|  496|Caenorhabditis elegans splicing factor
           U2AF65 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  FNVFSNLCFRLQDPGNPASLCKKVVQENILF 102
           FN   +LC   Q PGNP  LC+  + +N  F
Sbjct: 204 FNQQMHLCGLAQAPGNPILLCQINLDKNFAF 234


>AC024875-3|AAK29989.1|  496|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform a protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  FNVFSNLCFRLQDPGNPASLCKKVVQENILF 102
           FN   +LC   Q PGNP  LC+  + +N  F
Sbjct: 204 FNQQMHLCGLAQAPGNPILLCQINLDKNFAF 234


>AC024875-2|AAM44400.1|  471|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform d protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  FNVFSNLCFRLQDPGNPASLCKKVVQENILF 102
           FN   +LC   Q PGNP  LC+  + +N  F
Sbjct: 179 FNQQMHLCGLAQAPGNPILLCQINLDKNFAF 209


>AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform c protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  FNVFSNLCFRLQDPGNPASLCKKVVQENILF 102
           FN   +LC   Q PGNP  LC+  + +N  F
Sbjct: 182 FNQQMHLCGLAQAPGNPILLCQINLDKNFAF 212


>Z70037-5|CAA93880.1|  648|Caenorhabditis elegans Hypothetical
           protein K12D12.5 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 586 GTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNN 473
           G +TG+   +   L AVK  L+  E+L + +L IR N+
Sbjct: 550 GPVTGIVNNIRAKLAAVKSALQQAEQLGIASLIIRTND 587


>Z49069-4|CAA88868.1|  648|Caenorhabditis elegans Hypothetical
           protein K12D12.5 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 586 GTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNN 473
           G +TG+   +   L AVK  L+  E+L + +L IR N+
Sbjct: 550 GPVTGIVNNIRAKLAAVKSALQQAEQLGIASLIIRTND 587


>AL034393-13|CAA22317.1|  340|Caenorhabditis elegans Hypothetical
           protein Y18D10A.17 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 653 QVFNETKPRDGHYRVEKRQCRSWNNYRGG 567
           Q+    +P  G Y+   +  R +NNYRGG
Sbjct: 131 QIIQNQRPGRGGYQQNFQANRGYNNYRGG 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,367
Number of Sequences: 27780
Number of extensions: 259705
Number of successful extensions: 636
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)