Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g24
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    27   2.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   4.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   9.7  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   9.7  

>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 223 QIRARL--LRGTNF*DCSKLFNKLSFSDHKKPIDVDHMNNEFLDVNI 89
           Q RA L  LRG    D S L   L FSD  K + V   N   L ++I
Sbjct: 82  QFRAELMFLRGIKVADSSVLMLSLDFSDSGKELAVSMSNGSVLIIDI 128


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 520 KIQQLMTIYYLFKLKQNIVKFQL*LTNENQIIGL 621
           K+  L+    LFK   N+VKFQ  L  E Q++ L
Sbjct: 168 KLVHLLFFKSLFKFSTNLVKFQWFLVPEPQMLQL 201


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 331 VIMGIQAFSPSAPVKGLQRTLRKTYCNC 248
           + + I+ F P    +   RTL  T+C C
Sbjct: 823 IFLSIKLFKPLELTRSFWRTLVSTFCRC 850


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 738 YWQNYSAWSGYYGQGE 691
           +W N   W G YG GE
Sbjct: 357 WWWNNDTWDGLYGLGE 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,946
Number of Sequences: 5004
Number of extensions: 60059
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)