Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g24
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448...    29   4.4  
01_05_0604 - 23583244-23584989                                         28   7.7  

>01_06_1387 +
           36944138-36944147,36944272-36944333,36944825-36944865,
           36945217-36945286,36946146-36946826,36946907-36946981,
           36947057-36947163,36947264-36947370,36947463-36947522,
           36947616-36947689,36947788-36947838,36948009-36948058,
           36948079-36948123,36948161-36948221,36948284-36948349,
           36948700-36948789,36948875-36948940,36949039-36949134,
           36949219-36949308,36949371-36949388
          Length = 639

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 352 KSIAKFQTFRKRLIYLSSLFQCHSDFEHIEAIP 450
           K +AKFQT +K    LS L Q  + F H E+ P
Sbjct: 313 KILAKFQTRKKATCKLSPLQQLQTMFSHKESAP 345


>01_05_0604 - 23583244-23584989
          Length = 581

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 175 KLFNKLSFSDHKKPIDVDHMNNEFLDVNISL-WDSLEGSQWFPXRRHRSSLINYQY 11
           K+F+ +S+ +H K   + HM     D+ IS+    L+ + +FP     +S++  +Y
Sbjct: 449 KVFDPMSWDEHIKRHVLPHMRKALHDLEISVRMTWLQNNNFFPLVMRWASIVPVKY 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,193
Number of Sequences: 37544
Number of extensions: 333136
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)