Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g22
         (782 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC105606-1|AAI05607.1|   97|Homo sapiens HELLS protein protein.        32   2.7  
DQ181928-1|ABA19229.1|  540|Homo sapiens CARDIF protein.               30   8.2  
DQ174270-1|AAZ80417.1|  540|Homo sapiens mitochondrial anti-vira...    30   8.2  
DQ167126-1|ABA54890.1|  540|Homo sapiens virus-induced signaling...    30   8.2  
BC044952-1|AAH44952.1|  540|Homo sapiens virus-induced signaling...    30   8.2  
BC016048-1|AAH16048.1|  317|Homo sapiens LRRC38 protein protein.       30   8.2  
AL603749-2|CAH70436.1|  294|Homo sapiens leucine rich repeat con...    30   8.2  
AL354712-1|CAI21926.1|  294|Homo sapiens leucine rich repeat con...    30   8.2  
AL353194-3|CAI11041.1|  540|Homo sapiens novel protein protein.        30   8.2  
AL109804-18|CAI18851.1|  540|Homo sapiens novel protein protein.       30   8.2  
AB232371-1|BAE79738.1|  540|Homo sapiens Ips-1 protein.                30   8.2  
AB097003-1|BAC77356.1|  540|Homo sapiens putative NFkB activatin...    30   8.2  
AB033097-1|BAA86585.1|  542|Homo sapiens KIAA1271 protein protein.     30   8.2  

>BC105606-1|AAI05607.1|   97|Homo sapiens HELLS protein protein.
          Length = 97

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -2

Query: 781 EQQSXTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDER 602
           E++   E A + +  K+L K   S   +S   +   + + LEK NI Y   ++  M+ ++
Sbjct: 32  EEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQQK 90

Query: 601 KMSKRKK 581
           K  K+KK
Sbjct: 91  KKKKKKK 97


>DQ181928-1|ABA19229.1|  540|Homo sapiens CARDIF protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338


>DQ174270-1|AAZ80417.1|  540|Homo sapiens mitochondrial anti-viral
           signaling protein protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338


>DQ167126-1|ABA54890.1|  540|Homo sapiens virus-induced signaling
           adapter protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338


>BC044952-1|AAH44952.1|  540|Homo sapiens virus-induced signaling
           adapter protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338


>BC016048-1|AAH16048.1|  317|Homo sapiens LRRC38 protein protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 282 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 374
           SL  +S+ SF+  +F+L  T +C+ + +G+A
Sbjct: 250 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 280


>AL603749-2|CAH70436.1|  294|Homo sapiens leucine rich repeat
           containing 38 protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 282 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 374
           SL  +S+ SF+  +F+L  T +C+ + +G+A
Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257


>AL354712-1|CAI21926.1|  294|Homo sapiens leucine rich repeat
           containing 38 protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 282 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 374
           SL  +S+ SF+  +F+L  T +C+ + +G+A
Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257


>AL353194-3|CAI11041.1|  540|Homo sapiens novel protein protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338


>AL109804-18|CAI18851.1|  540|Homo sapiens novel protein protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338


>AB232371-1|BAE79738.1|  540|Homo sapiens Ips-1 protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338


>AB097003-1|BAC77356.1|  540|Homo sapiens putative NFkB activating
           protein protein.
          Length = 540

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 338


>AB033097-1|BAA86585.1|  542|Homo sapiens KIAA1271 protein protein.
          Length = 542

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 157 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPA 62
           TVALK+P  P++   VP+ +  S K   +VP+
Sbjct: 309 TVALKVPANPASVSTVPSKLPTSSKPPGAVPS 340


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,933,342
Number of Sequences: 237096
Number of extensions: 2306163
Number of successful extensions: 5153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5151
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)