Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10g17
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 268 3e-72
03_01_0547 + 4093196-4093657,4094267-4095148 268 3e-72
03_01_0544 + 4082528-4082989,4083585-4084466 268 3e-72
03_01_0543 + 4076981-4077442,4078145-4079026 268 3e-72
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 66 2e-11
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 66 2e-11
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 66 2e-11
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 58 1e-08
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 53 2e-07
02_04_0462 + 23131433-23132836 42 8e-04
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 38 0.012
04_04_0511 - 25800371-25800454,25800563-25800629,25800903-258010... 29 3.3
11_06_0516 + 24502645-24504507 29 4.4
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 29 4.4
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 5.8
07_03_0634 + 20125242-20125688 28 7.6
06_03_1165 - 28106604-28106915 28 7.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 7.6
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 268 bits (657), Expect = 3e-72
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = -3
Query: 764 PGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 585
PG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P
Sbjct: 262 PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDP 321
Query: 584 PKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS 405
K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK
Sbjct: 322 AKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKF 381
Query: 404 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
+K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 382 LKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2
Query: 807 GTVPVGRVETGVLKP 763
GTVPVGRVETGVLKP
Sbjct: 248 GTVPVGRVETGVLKP 262
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 268 bits (657), Expect = 3e-72
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = -3
Query: 764 PGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 585
PG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P
Sbjct: 262 PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDP 321
Query: 584 PKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS 405
K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK
Sbjct: 322 AKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKF 381
Query: 404 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
+K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 382 LKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2
Query: 807 GTVPVGRVETGVLKP 763
GTVPVGRVETGVLKP
Sbjct: 248 GTVPVGRVETGVLKP 262
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 268 bits (657), Expect = 3e-72
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = -3
Query: 764 PGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 585
PG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P
Sbjct: 262 PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDP 321
Query: 584 PKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS 405
K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK
Sbjct: 322 AKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKF 381
Query: 404 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
+K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 382 LKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2
Query: 807 GTVPVGRVETGVLKP 763
GTVPVGRVETGVLKP
Sbjct: 248 GTVPVGRVETGVLKP 262
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 268 bits (657), Expect = 3e-72
Identities = 119/168 (70%), Positives = 145/168 (86%)
Frame = -3
Query: 764 PGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 585
PG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P
Sbjct: 262 PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDP 321
Query: 584 PKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS 405
K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK
Sbjct: 322 AKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKF 381
Query: 404 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
+K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 382 LKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2
Query: 807 GTVPVGRVETGVLKP 763
GTVPVGRVETGVLKP
Sbjct: 248 GTVPVGRVETGVLKP 262
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 66.5 bits (155), Expect = 2e-11
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Frame = -3
Query: 761 GTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP- 585
G+ V+ +P VKS+E + A GDNV +++ + +L + G NP
Sbjct: 510 GSKVLISPCGEVAAVKSIERDSNSCDIARAGDNVAVSLQGIDGSKL----ILGGILCNPG 565
Query: 584 -PKGAADFTA-QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNP 411
P ++F +V+VL+ I GY H A + +I +D+ GK ++ P
Sbjct: 566 FPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAP 624
Query: 410 KSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 270
+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 625 RFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 66.5 bits (155), Expect = 2e-11
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 3/167 (1%)
Frame = -3
Query: 761 GTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP- 585
G+ V+ +P VKS+E + A GDNV +++ + +L + G NP
Sbjct: 510 GSKVLISPCGEVAAVKSIERDSNSCDIARAGDNVAVSLQGIDGSKL----ILGGILCNPG 565
Query: 584 -PKGAADFTA-QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNP 411
P ++F +V+VL+ I GY H A + +I +D+ GK ++ P
Sbjct: 566 FPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAP 624
Query: 410 KSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 270
+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 625 RFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 66.5 bits (155), Expect = 2e-11
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Frame = -3
Query: 761 GTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 582
G ++ P +V + + ++ A P +NV + + +++ G+V S NP
Sbjct: 255 GDSLLVMPNKTNVKVIGISLDEHKVRRAGPAENVRVKLSGIEDEDIMAGFVLS-SIGNPV 313
Query: 581 KGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 408
+F AQ+ +L + GY VL H+ C+ ++ E++D + K + K
Sbjct: 314 GAVTEFNAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKK 373
Query: 407 S-------IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 303
+K+G + + + +C+E+F +FP LGRF +R
Sbjct: 374 KPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 57.6 bits (133), Expect = 1e-08
Identities = 39/167 (23%), Positives = 76/167 (45%)
Frame = -3
Query: 761 GTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 582
G+ ++ P VK++E + + A GDNV ++ + + G V + P
Sbjct: 494 GSKILVMPFGELAVVKTIERNSSSCNLARAGDNVAIGLQGIDPSHIMPGGVICHP-DYPV 552
Query: 581 KGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSI 402
A+ +++VL+ I G ++ +I ++++TGK+++ P+ +
Sbjct: 553 SVASCLELKILVLDITVPILVGL---------QVSASMVKILSLLEQKTGKASKKIPRFL 603
Query: 401 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
S A++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 604 TSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = -3
Query: 761 GTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 582
G ++ P +V SV + ++ A PG+NV + + ++ G+V K NP
Sbjct: 210 GDNMLVMPNKANVKVISVHCDEDRVRSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPV 268
Query: 581 KGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 408
++F AQ+ +L + GY VL H+ C+ E+ E++D + K ++ K
Sbjct: 269 SAISEFRAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELIEEIDLKRRKEGDIKKK 328
Query: 407 SIK 399
K
Sbjct: 329 KSK 331
>02_04_0462 + 23131433-23132836
Length = 467
Score = 41.5 bits (93), Expect = 8e-04
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 3/156 (1%)
Frame = -3
Query: 719 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 540
V VEM + + +A+ GDNVG ++ + ++ RG V + P D V+ +
Sbjct: 324 VTGVEMFQKTMDDAMAGDNVGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKD 383
Query: 539 HPGQIS---NGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV 369
G+ S GY P T + +I D K GD + +
Sbjct: 384 EGGRHSPFFPGYRPQFYMRTTDVTGNVTKIMNDKDEEA--------KMCMPGDRVKMVVE 435
Query: 368 PSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
+P+ E RFA+R+ +TV GVI +
Sbjct: 436 LIQPVACEQGM------RFAIREGGKTVGAGVINTI 465
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 37.5 bits (83), Expect = 0.012
Identities = 40/157 (25%), Positives = 65/157 (41%)
Frame = -3
Query: 731 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 552
+ T V VEM + L GDNVG ++ + +++RG V K K F A++
Sbjct: 311 LKTTVTGVEMFKKILDHGEAGDNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKFEAEI 368
Query: 551 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 372
VL +T L ++ + A++ KV G + ++ +G L
Sbjct: 369 YVLTK--DEGGRHTAFLSNYSPQFYFRTADVTGKVVLPDGVEMVMPGDNVTAG----FEL 422
Query: 371 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
+ PL P RFA+R+ +TV GV+ V
Sbjct: 423 ISPVPL--------EPGQRFALREGGRTVGAGVVSKV 451
>04_04_0511 -
25800371-25800454,25800563-25800629,25800903-25801000,
25801094-25801152,25801247-25801379,25801461-25801532,
25801628-25801678,25802000-25802111,25802231-25802604
Length = 349
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = -3
Query: 749 VFAPANITTEVKSVEMHHEAL-QEAVPGDNVGFNV-KNVSVKELRRGYVAGDSKNNPPKG 576
+F P+ + SV +H + E + GDN ++ +N + + G V + N P G
Sbjct: 34 LFVPSGTMANLISVLVHCDTRGSEVILGDNSHIHIYENGGISTI--GGVHPKTVRNNPDG 91
Query: 575 AADFTAQVIVLNHP-GQISNGYTPVLDCHTAHIAC 474
D V+ + HP G + T ++ H C
Sbjct: 92 TMDIDKIVVAIRHPDGALYYPTTRLICLENTHANC 126
>11_06_0516 + 24502645-24504507
Length = 620
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -3
Query: 710 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 531
VE HEAL AV D V S++E+ R GD + PP + V++ G
Sbjct: 114 VEQVHEALL-AVDAD---IEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMG 169
Query: 530 QISNG 516
+I G
Sbjct: 170 EIRRG 174
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = -3
Query: 764 PGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDS---K 594
P TIV +P T KSVE +E L A G ++G + + + G+ K
Sbjct: 262 PSTIVGPSPVAGITVDKSVEFSYEELSNATQGFSIGNKIGQGGFGAVYYAELRGEKAAIK 321
Query: 593 NNPPKGAADFTAQVIVLNH 537
+ +F A++ VL H
Sbjct: 322 KMDMQATHEFLAELKVLTH 340
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 545 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSI 402
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
>07_03_0634 + 20125242-20125688
Length = 148
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +1
Query: 160 CMKNCAVNS-SSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNS 336
C + A S S++ + A ++A T PP ++LT + L R P G
Sbjct: 35 CANSVAYLSLSAFVMSGRAVASAAATASPPVGVQLTVTSEHSEWSILSPRKTCHPTGKVK 94
Query: 337 WKDSTHRGLE---GTKLTMAASPDLMDFGLTSVDLP 435
WK +E GT P+ G +V LP
Sbjct: 95 WKGRREHFVERLVGTAHLPRRRPERQPQGSGAVPLP 130
>06_03_1165 - 28106604-28106915
Length = 103
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 720 SQVCGDAPRSSPRSCTWRQCRFQRKERVRQGIASWLCCW 604
SQ G A SSP + R R +R E + A L CW
Sbjct: 62 SQTGGAAASSSPAAACGRAARSKRSEEEKMQKAYHLVCW 100
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 220 AALVTLPPPASLKLT-ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASP 396
A + L PA + A+ P TV + T ++ RG K +GL G KLT S
Sbjct: 266 ALIYPLVSPAVVSCDIAIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLST 325
Query: 397 DLMDFGLTSVDLPVRR 444
L LT ++ +R
Sbjct: 326 ALSPIALTCMEPKKKR 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,986,122
Number of Sequences: 37544
Number of extensions: 473503
Number of successful extensions: 1419
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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