Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10g17
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 282 2e-76
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 282 2e-76
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 282 2e-76
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 87 2e-17
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 4e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 42 5e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 33 0.18
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 33 0.18
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 33 0.18
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.9
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 5.2
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.8
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 9.0
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 28 9.0
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 282 bits (691), Expect = 2e-76
Identities = 133/182 (73%), Positives = 150/182 (82%)
Frame = -3
Query: 806 VPCPSAELKLVC*NPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 627
VP E ++ PG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 228 VPVGRVETGII--KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 285
Query: 626 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 447
+RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKV
Sbjct: 286 IRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKV 345
Query: 446 DRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 267
DRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK
Sbjct: 346 DRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIK 405
Query: 266 AV 261
+V
Sbjct: 406 SV 407
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -2
Query: 807 GTVPVGRVETGVLKP 763
GTVPVGRVETG++KP
Sbjct: 226 GTVPVGRVETGIIKP 240
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 282 bits (691), Expect = 2e-76
Identities = 133/182 (73%), Positives = 150/182 (82%)
Frame = -3
Query: 806 VPCPSAELKLVC*NPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 627
VP E ++ PG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 262 VPVGRVETGII--KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 319
Query: 626 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 447
+RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKV
Sbjct: 320 IRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKV 379
Query: 446 DRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 267
DRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK
Sbjct: 380 DRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIK 439
Query: 266 AV 261
+V
Sbjct: 440 SV 441
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -2
Query: 807 GTVPVGRVETGVLKP 763
GTVPVGRVETG++KP
Sbjct: 260 GTVPVGRVETGIIKP 274
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 282 bits (691), Expect = 2e-76
Identities = 133/182 (73%), Positives = 150/182 (82%)
Frame = -3
Query: 806 VPCPSAELKLVC*NPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 627
VP E ++ PG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK+
Sbjct: 262 VPVGRVETGII--KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKD 319
Query: 626 LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 447
+RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKV
Sbjct: 320 IRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKV 379
Query: 446 DRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 267
DRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK
Sbjct: 380 DRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIK 439
Query: 266 AV 261
+V
Sbjct: 440 SV 441
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -2
Query: 807 GTVPVGRVETGVLKP 763
GTVPVGRVETG++KP
Sbjct: 260 GTVPVGRVETGIIKP 274
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 86.6 bits (205), Expect = 2e-17
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 1/172 (0%)
Frame = -3
Query: 773 C*NPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 594
C G +V P +V + + V GDN+ F +K + EL+ G++ S
Sbjct: 363 CVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIIC-SP 421
Query: 593 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 414
++ K F A+V+VL H I++GY+ VL +A + +D++TG+
Sbjct: 422 DSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA- 480
Query: 413 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 261
K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 481 -KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -3
Query: 566 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 387
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 386 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -3
Query: 566 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 387
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 386 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = -3
Query: 719 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 540
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 539 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 399
HP I Y +L + + ++V RTG +V K I+
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATLVSMGKEV-LRTGDRDKVQFKFIR 524
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.5 bits (73), Expect = 0.18
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -3
Query: 731 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 552
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 354
Query: 551 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 375
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 355 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 404
Query: 374 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
L + + +E P RF +R +T+ GV V
Sbjct: 405 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.5 bits (73), Expect = 0.18
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -3
Query: 731 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 552
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 551 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 375
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 405
Query: 374 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
L + + +E P RF +R +T+ GV V
Sbjct: 406 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.5 bits (73), Expect = 0.18
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -3
Query: 731 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 552
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 551 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 375
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 405
Query: 374 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 261
L + + +E P RF +R +T+ GV V
Sbjct: 406 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 145 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 300
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 199 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 351
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 120 KRATNSFLFYIFYKACNVTLFYNXYKVIHNISETFC 13
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 719 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 540
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 539 H 537
H
Sbjct: 509 H 509
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 503 LDCHTAHIACKFAEIKEKVDRRTGKSTE 420
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 503 LDCHTAHIACKFAEIKEKVDRRTGKSTE 420
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 503 LDCHTAHIACKFAEIKEKVDRRTGKSTE 420
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 553 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 684
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 764 PGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 642
PGTI F P ITTE K H L+ + GD +++
Sbjct: 361 PGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,505
Number of Sequences: 27780
Number of extensions: 405372
Number of successful extensions: 1146
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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