Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g16
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   4.1  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   5.5  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/79 (21%), Positives = 36/79 (45%)
 Frame = +2

Query: 137  DSISHY*NMLKLVLQVSFAQ*NLCSFTYFLF*KIDNVKTRIIIPNRTFQALSKNISHLCI 316
            D  +HY N   ++L++ +   +  +F  +L     N   +I   ++   + +K + H+  
Sbjct: 804  DEKTHYENTYVMILRLIYGIVDQSAFEDYLRFYYGNKAYKIYTIDKLVWSAAKQVHHIVS 863

Query: 317  VLYYKNIFKSKQQNQRATP 373
               YK +    +QN  A+P
Sbjct: 864  DGKYKFVTSLVEQNSSASP 882


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 438 KTPDQEKIMFRITLGVYRTLN 376
           K  D+EK+M+ +  GVY +LN
Sbjct: 317 KLDDEEKVMYYVNDGVYGSLN 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,119
Number of Sequences: 5004
Number of extensions: 69549
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)