Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g16
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cycl...    29   3.0  
Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF036706-14|AAK39276.2|  390|Caenorhabditis elegans Kinase, glh-...    28   6.8  
AF036701-1|AAB88368.2|  332|Caenorhabditis elegans Kinase, glh-b...    28   6.8  
U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +2

Query: 260 IIPNRTFQALSKNISHL-CIVL-YYKNIFKSKQQNQRATPIFKV--RYTPSVIRNII 418
           ++PN     L    S + C +  +Y  +F+S +Q  R+TPIF +   +  +V+R  I
Sbjct: 21  VVPNGKIAVLVGTCSIVFCFIFPFYIVVFRSNRQRDRSTPIFPIIKHFYSTVVRTYI 77


>Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical
           protein R01E6.1 protein.
          Length = 1014

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 273 EHFKPFLKIYHTCVLYCI 326
           + F  FL+IYH C  YC+
Sbjct: 285 DQFTTFLRIYHACYAYCV 302


>AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cyclase
           protein.
          Length = 1017

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 273 EHFKPFLKIYHTCVLYCI 326
           + F  FL+IYH C  YC+
Sbjct: 288 DQFTTFLRIYHACYAYCV 305


>Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical
           protein B0285.7 protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = -3

Query: 805 YVRVRIKIYKINIHKVEINKVKVPKFEIHKVSKYISSSICCSGHHQTLETFYREVATSL 629
           +   + ++  I++H V+I+ ++  +  IH V+     +IC S  HQ  +  + E+A S+
Sbjct: 201 FASTKDQVQAISLHSVKIHNLE-NRDRIHVVNCNTGETICVSRVHQIDDLIHLELAQSI 258


>AF036706-14|AAK39276.2|  390|Caenorhabditis elegans Kinase,
           glh-binding protein 1 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 588 FLSSSICCSGHHHTLQTFHREVAKPTEVIINFR 490
           F+  S+C   H H     HR++ KP+ +++N R
Sbjct: 144 FVYQSLCAIKHLHNSGVIHRDL-KPSNIVVNDR 175


>AF036701-1|AAB88368.2|  332|Caenorhabditis elegans Kinase,
           glh-binding protein 2 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 621 LDEKRLQ*LVPFLSSSICCSGHHHTLQTFHREVAKPTEVIINFR 490
           LD + L  LV     S+C   H H L   HR++ KP+ +++N R
Sbjct: 127 LDHETLSFLV---YQSLCAIKHLHNLGFIHRDL-KPSNIVVNER 166


>U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical
           protein D1014.2 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 418 FFLIRSFVGRFCLLLTICD-THPKMPKVNYYFR 513
           FF+    +  FCLLLTI    HPK    N Y R
Sbjct: 189 FFITLFSIAFFCLLLTIVHFIHPKTRAANKYAR 221


>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 382 GSVHTECD-PEHYFFLIRSFVGRFCLLLTICDTHPKMPKVNYYFRRFSNFS 531
           G    EC  P+     +R  +GR C  +  C+T      ++ Y+  F N+S
Sbjct: 59  GCARMECSAPKVCVERVRPCIGRSCKEIATCETPNSTFPLSVYYINFENYS 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,004
Number of Sequences: 27780
Number of extensions: 389173
Number of successful extensions: 988
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)