Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g16
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   3.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   5.8  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   5.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   5.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.7  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 298 IFRKGLKCSIWYDYSCFYIVYF 233
           I RK +  S+W+DY    IVYF
Sbjct: 61  IHRKKVLLSVWWDYK--GIVYF 80


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 298 IFRKGLKCSIWYDYSCFYIVYF 233
           I RK +  S+W+DY    IVYF
Sbjct: 183 IHRKKVLLSVWWDYK--GIVYF 202


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 573 YWN*GTEQVIEVVFHLNT 626
           YW  GT  +I V  +LNT
Sbjct: 195 YWKSGTWDIINVPAYLNT 212


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 463 STTNKTDRQNSGSRKNNVPDHTRCVPNLKY 374
           S +NKT   N+    NN  ++ +   N+ Y
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYKKLYYNINY 113


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 306 TCVLYCITKTYSRVNNK 356
           TC +YC+ + +S V+++
Sbjct: 71  TCYMYCLLEAFSLVDDE 87


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 306 TCVLYCITKTYSRVNNK 356
           TC +YC+ + +S V+++
Sbjct: 71  TCYMYCLLEAFSLVDDE 87


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 651 TEKLLHLWKYLD 616
           T  ++H WKYLD
Sbjct: 35  TLNVIHKWKYLD 46


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 276 HFKPFLKIY-HTCVLYCITKTYSRVNNKISGLHQYLRFGTHRV 401
           HF  F+  Y +  VL  + +      N +  LH+YL+F   R+
Sbjct: 72  HFVGFVGQYGYDRVLSVLGRHVRDFLNGLDNLHEYLKFSYPRM 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,630
Number of Sequences: 438
Number of extensions: 4789
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)