Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10g13
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 26 1.2
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 1.6
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 2.1
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 25 3.7
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 24 4.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 4.9
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 24 6.5
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 23 8.6
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 23 8.6
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 23 8.6
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 1.2
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 37 SRQSYSSNSAKREFDVQPNLNTSPVSFSSDL-LSGSRFRSGS 159
S++ S+S +FD P+LN+SP +F+S+L +S SRF S
Sbjct: 169 SQKLSKSSSDLPQFDY-PSLNSSP-TFNSNLPISSSRFEKTS 208
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 198 TY*PESSCFADECTTGSESR 139
+Y P SS DEC T ESR
Sbjct: 362 SYFPSSSSIPDECNTEEESR 381
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 2.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 260 CDRKLTGGPEAFPASEGLRRRPTNLRAAALRMNVLPDRNR 141
C K TG FP+ R RPT A + ++ P RNR
Sbjct: 311 CPHK-TGNRPGFPSLNIPRTRPTTAGIANTQFDLEPYRNR 349
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 24.6 bits (51), Expect = 3.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 221 ASEGLRRRPTNLRAAALRMNVLPDRNRDPLRRSDEKL 111
AS G RRP +RA L PD ++ L++ + L
Sbjct: 166 ASNGYFRRPAAMRAQTLVPITQPDSKKNELKQKFKHL 202
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 24.2 bits (50), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 28 RKGSRQSYSSNSAKREFDVQPNLNTSPVSFSS 123
R S SYSS+S QP++ +SF+S
Sbjct: 176 RHRSSNSYSSSSNGNHVRFQPSIAEEEISFNS 207
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 4.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 25 SRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGS 141
SR SYSSN ++P+L TS VS +S ++ S
Sbjct: 909 SRNEGTTSYSSNITVTSSTLKPSL-TSSVSTASSYIASS 946
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 71 LFAEFDEYDCRDPFLLLMLDLKS 3
+FAEF E D +DP LL+ KS
Sbjct: 113 VFAEFREKDKKDPAKLLVSHNKS 135
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 23.4 bits (48), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 174 FADECTTGSESRPAEKIRRETYRTGV*VRLHVE 76
FA T E P + RR TYR + V HV+
Sbjct: 228 FAHNVETVEELTPFVRDRRATYRQSLSVLKHVK 260
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +1
Query: 37 SRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFRSGST 162
++ S + + ++ ++QP++ SPV+F D +F S ++
Sbjct: 18 AQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFISDNS 59
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 324 TDLHLTVLHTRI 289
T LHL +LHTRI
Sbjct: 143 TQLHLWILHTRI 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.125 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,846
Number of Sequences: 5004
Number of extensions: 21458
Number of successful extensions: 45
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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