Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g13
         (325 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   4.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   8.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   8.6  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 225 KGLRATSKFSIT*KKDLDRIEIC 293
           K L  TS F +   +D+D +E C
Sbjct: 180 KDLMETSYFKVVVVEDVDSVECC 202


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -1

Query: 274 RSFFYVIENLLVARRP---FRPPKASEGDLL 191
           R F +++  LLV RRP   F   + S G +L
Sbjct: 347 RVFIHILPRLLVMRRPQYKFETNRYSSGRVL 377


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -1

Query: 274 RSFFYVIENLLVARRP---FRPPKASEGDLL 191
           R F +++  LLV RRP   F   + S G +L
Sbjct: 347 RVFIHILPRLLVMRRPQYKFETNRYSSGRVL 377


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 283 MRSRSFFYVIENLLVARRPFRPPKASEGDLLT*EQLLC 170
           + +R F+Y + +L    +   PP +  G LL  E   C
Sbjct: 278 LSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYC 315


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 216 GGRKGLRATSKFSIT*KKDLDRIEICAYAILS 311
           GG +GL  T+      K+DL ++++     LS
Sbjct: 2   GGEEGLGVTTGQPNLYKQDLSKLDVSKLTALS 33


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 221 ASEGLRRRPTNLRAAALRMNVLPDRNRD 138
           A +GLRRR   L+++    N+     R+
Sbjct: 431 AQDGLRRRMDKLKSSIEEANLAVSAERE 458


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 234 GGLSGLRRPPKETY*PESSCF 172
           GG+  LR PP + + P+   F
Sbjct: 96  GGIGVLRLPPDKVWKPDIVLF 116


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 93  PKHQSGKFLVGSSQRVAIPI 152
           P H+  KF+ GSS+R  + +
Sbjct: 242 PVHRWYKFIEGSSRRQPVQL 261


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 101 VFRLGCTSNSLFAEFDEYDC 42
           +FR  C  +  F  FDE  C
Sbjct: 126 IFRSSCDIDVEFFPFDEQRC 145


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -3

Query: 104 LVFRLGCTSNSLFAEFDEYDCR 39
           L  +L C  N L    D  +C+
Sbjct: 157 LTLKLSCAMNFLIYPHDTQECK 178


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 124 PTRNLPDWCLG 92
           P  N+P+W +G
Sbjct: 348 PQNNVPNWVMG 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.125    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,211
Number of Sequences: 438
Number of extensions: 1617
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)