Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10g11
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 312 3e-86
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 221 1e-58
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 180 2e-46
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 171 2e-43
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 125 1e-29
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 85 1e-17
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 55 1e-08
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 49 1e-06
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 42 9e-05
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 29 1.2
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 2.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 6.3
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 6.3
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 26 6.3
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 8.3
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 312 bits (767), Expect = 3e-86
Identities = 133/230 (57%), Positives = 183/230 (79%)
Frame = -3
Query: 891 MYQLWILGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSV 712
+Y+LW LGALD G LT LG++M+ FP+DP+ ++I+A D C+ E++ IVSMLSVPSV
Sbjct: 884 LYELWTLGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSV 943
Query: 711 FYRPQGREEEADAVKEKFQVPESDHLTLLHLYNQWKSNNYSSQWCTEHFVHAKAMRKVRE 532
FYRP+ R EE+DA +EKF VPESDHL LL++Y W+ N YS+ WC++HF+H+K +++ R+
Sbjct: 944 FYRPKERAEESDAAREKFNVPESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARD 1003
Query: 531 VRQQLKDILQQQRLPLVSCGTDWDTVRKCICSAYFQQAARLKGIGEYVNCRTGMPCHLHP 352
+RQQL +I+ +Q++ L S +DWD VR+ +CSAYF QAA KGIGEYV+ R+GMPCHLH
Sbjct: 1004 IRQQLVEIMSKQKISLESV-SDWDIVRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHV 1062
Query: 351 TSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKE 202
TS+L+GLG PDYV+YHEL +T++EYM+ VT+VD WLAE G +++SVKE
Sbjct: 1063 TSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSVKE 1112
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 221 bits (539), Expect = 1e-58
Identities = 99/240 (41%), Positives = 154/240 (64%), Gaps = 1/240 (0%)
Frame = -3
Query: 891 MYQLWILGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSV 712
+ L+ L ALD G LT LGR+MA+FP++P +LI + ++GCS E+L I++MLSVP++
Sbjct: 904 LQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEMLSIIAMLSVPNI 963
Query: 711 FYRPQGREEEADAVKEKFQVPESDHLTLLHLYNQWKSNNYSSQWCTEHFVHAKAMRKVRE 532
+ RP+ +++EAD + +F PESDHLTLL++Y WK N S WC EH++ A+ MR+ +
Sbjct: 964 WSRPREKQQEADRQRAQFANPESDHLTLLNVYTTWKMNRCSDNWCYEHYIQARGMRRAED 1023
Query: 531 VRQQLKDILQQQRLPLVSCGTDWDTVRKCICSAYFQQAA-RLKGIGEYVNCRTGMPCHLH 355
VR+QL ++ + R P+VSCG + + + +CS YF A R G Y P ++H
Sbjct: 1024 VRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMH 1083
Query: 354 PTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKETGKSNRDKR 175
P+ LFG + ++V+YHEL T++EYMH V+ V+ +WL E+ P FF + ++ K+
Sbjct: 1084 PSGVLFGK--AAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSKTKK 1141
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 180 bits (438), Expect = 2e-46
Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 7/243 (2%)
Frame = -3
Query: 882 LWILGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLS-VPSVFY 706
L+ LGAL+ G LT LGRQMAEFP DP LI ++ GC EVL IVSML S+FY
Sbjct: 815 LYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFY 874
Query: 705 RPQGREEEADAVKEKFQVPESDHLTLLHLYNQWKSNNYSSQWCTEHFVHAKAMRKVREVR 526
RP+ + EAD + F P DHLTLLH++N+W ++S W E+F+ K++ + R+VR
Sbjct: 875 RPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVR 934
Query: 525 QQLKDILQQQRLPLVSCGTD-WDTVRKCICSAYFQQAARLKGIGE-YVNCRTGMPCHLHP 352
QL ++ ++ + LV+ ++ D ++K I + YF AARL G+ Y ++ ++HP
Sbjct: 935 DQLANLCERVEIELVTNSSESLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHP 994
Query: 351 TSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFF---SVKETGKS-NR 184
+S++ P ++Y EL +T +EY +T + WL E+ P +F +++E K+ R
Sbjct: 995 SSSVAEK--KPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPENIEELQKTQKR 1052
Query: 183 DKR 175
KR
Sbjct: 1053 HKR 1055
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 171 bits (415), Expect = 2e-43
Identities = 85/233 (36%), Positives = 138/233 (59%), Gaps = 5/233 (2%)
Frame = -3
Query: 885 QLWILGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSVFY 706
+L L LD G LT LGR+ +EFPLDP MLI + + CS EVL + ++LSVP+VF
Sbjct: 479 ELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPNVFV 538
Query: 705 RPQGREEEADAVKEKFQVPESDHLTLLHLYNQWKSNNYSSQWCTEHFVHAKAMRKVREVR 526
RP + AD ++++F P+ DHLTLL++Y+ +KS ++ WC HF+ +A+ VR
Sbjct: 539 RPNSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADNVR 598
Query: 525 QQLKDILQQQRLPLVSCGTD----WDTVRKCICSAYFQQAARLKGIGE-YVNCRTGMPCH 361
+QL+ +++Q + L+S D + +R+ + S +F Q A+ G+ YV +
Sbjct: 599 KQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVS 658
Query: 360 LHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKE 202
LHP+ GL +P++VVY+E +T + ++ VTA+ WL EL P ++ + +
Sbjct: 659 LHPSC---GLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDD 708
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 125 bits (301), Expect = 1e-29
Identities = 69/231 (29%), Positives = 123/231 (53%), Gaps = 3/231 (1%)
Frame = -3
Query: 882 LWILGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSVFYR 703
L+ +GALD G + LG QM+ PL P+ ++ A + C +EV+ +VS LS S+F
Sbjct: 491 LYSIGALDDNGHINDLGYQMSLIPLLPSLARAVLAAREHNCLSEVIDVVSCLSTDSMFLF 550
Query: 702 PQGREEEADAVKEKFQVPESDHLTLLHLYNQWKSNNYSS--QWCTEHFVHAKAMRKVREV 529
PQ + +EA + KF E D LT L+ Q+ +++ S QWC+++F++ +A++ + ++
Sbjct: 551 PQEKRDEAIEARLKFLHSEGDLLTCLNALRQYLESSHDSRKQWCSQNFINRRALKTILDI 610
Query: 528 RQQLKDILQQQRLPLVSC-GTDWDTVRKCICSAYFQQAARLKGIGEYVNCRTGMPCHLHP 352
R+QL++ + L S + + + S Y A L G Y +HP
Sbjct: 611 RKQLREHCLKDGWELNSSPEVNSENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHP 670
Query: 351 TSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKET 199
+S+LFG + ++YHEL T + Y+ V+++ + WL + P + + + T
Sbjct: 671 SSSLFGK--KVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAPHYLARRST 719
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 85.0 bits (201), Expect = 1e-17
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Frame = -3
Query: 882 LWILGALDGTGSLT-ALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSVFY 706
L++LG LD +G+LT LG Q++ LD L+ + GC+ E+L I S+L+ VFY
Sbjct: 423 LYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTSNQFGCTHEILSIASILTAGEVFY 482
Query: 705 RP-QGREEEADAVKEKFQVPESDHLTLLHLYNQWKSNNYSSQWCTEHFVHAKAMRKVREV 529
P + +A F E D +T L+++ + N QWC +++++ + +R+ ++
Sbjct: 483 NPTSSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQWCRKNYLNYQTLRQALDI 542
Query: 528 RQQLKDILQQQRLPLVS--CGTDWDTVRKCICSAYFQQAARLKGIGEY 391
R L L + +P +D + KC+ + + A L+ G Y
Sbjct: 543 RTHLVRFLNKFSIPTAQRLPSSDCSKILKCLLDGFVRNVAHLQNDGSY 590
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 55.2 bits (127), Expect = 1e-08
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 33/158 (20%)
Frame = -3
Query: 873 LGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSVFYRPQ- 697
LGA+D G LT LG QM+ FPL P MLI+ GC V+ +VS LS+ +F Q
Sbjct: 859 LGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIALVSALSINQLFVSKQS 918
Query: 696 ---------GREEEADAVKE---------------------KFQV--PESDHLTLLHLYN 613
R EE D + + +FQ P++ L+LL
Sbjct: 919 LLYDAHDKNSRSEETDLIDDDEIKQKEEYKNRMRGYFNAISRFQAIDPDAPALSLLSAVC 978
Query: 612 QWKSNNYSSQWCTEHFVHAKAMRKVREVRQQLKDILQQ 499
+ + ++C E+++ KA+ +V +R+Q+ +L++
Sbjct: 979 AYDYASDKRKFCKENYLREKALEEVTNLRKQIIGLLKR 1016
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 48.8 bits (111), Expect = 1e-06
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Frame = -3
Query: 873 LGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSVFYRPQG 694
+GAL + LT LG + P+D +L+ + G L I ++LS S F
Sbjct: 1009 VGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITAILSTKSPFL---- 1064
Query: 693 REEEADAVKEKFQVPESDHLTLLHLYNQW------KSNNYSSQWCTEHFVHAKAMRKVRE 532
++EA ++ K D L +Y+ W + + QWC E +H ++++R+
Sbjct: 1065 GDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTLQQIRQ 1124
Query: 531 VRQQLKDILQ 502
R +L + Q
Sbjct: 1125 NRNELSEAAQ 1134
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 42.3 bits (95), Expect = 9e-05
Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Frame = -3
Query: 873 LGALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSVFYRPQG 694
+GAL LT LG+ +++ P+D +L++ C IV+ML++ S F +
Sbjct: 1094 VGALSENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVDAASSIVAMLTIGSPFRKSVD 1153
Query: 693 REEEADAVKEKF--QVPESDHLTLLHLYNQWKSNNYS------SQWCTEHFVHAKAMRKV 538
E A+ + F + SD + + + Y W+ S + E +++ +A+
Sbjct: 1154 NEFSANKARLSFAKENTRSDLVLMYYAYCAWREICLSPLGPDEDSFAKEKYLNLEALSMT 1213
Query: 537 REVRQQLKDILQQQRLPLVSCGTDWDTVRKCICSAY 430
++ QL L+ +L S ++++ IC +
Sbjct: 1214 ESLKIQLLSELKDMKLLGASDVDTCKSLKRSICRRF 1249
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 642 DHLTLLHLYNQWKSNNYSSQWCT 574
D+L LLH++ W SN +S CT
Sbjct: 674 DNLALLHIFQFWMSNEVTSVNCT 696
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -1
Query: 665 RNSKSPNPIT*PSYTCTTSGNQTTTPVSGAR---STSFTRRR*GKCARFASS*RTFCNSS 495
R+S + N PS T TTS P GA+ +TS +R K A+ S R N++
Sbjct: 249 RSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNTSVLQRVEEKLAKRTQSFRREDNAN 308
Query: 494 GCRSCPAAPT 465
RS P+
Sbjct: 309 RERSTSRKPS 318
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 719 LQSSTVLKVARKKPTQSKRNSKSPNPIT*PSYTCTTSGNQT-TTPVSGARSTSFT 558
L SST + S S P+T + T TTS + T + VS A ST+ T
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTAT 336
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.6
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Frame = -1
Query: 680 PTQSKRNSKSPNPIT*PSYTCTTS------GNQTT--TPVSGARSTSFTRRR*GKCARFA 525
PT + + +P+ S +CTTS GN TT TP STS T + +
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324
Query: 524 SS*RTFCNSSGCRSCPAAPTGTPSGNAS 441
+ + S SC + + P+GN++
Sbjct: 325 TGTSSSPLPSTSTSCTTSTSIPPTGNST 352
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 680 PTQSKRNSKSPNPIT*PSYTCTTSGNQTTTPVSGARSTSFT 558
PT + + NP+ S +CTTS + T S + ST T
Sbjct: 152 PTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPIT 192
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 429 FQQAARLKGIGEYVNCRTGMPCHLHPTSA 343
FQ R+KG Y + P H HPT+A
Sbjct: 35 FQIQLRIKGYAVYHHGFLSSPSHKHPTTA 63
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 672 VKEKFQVPESDHLTLLHLYNQWKSNNYSSQWCTEHFVH 559
VK +++PE D L L QW N +S ++F+H
Sbjct: 65 VKAYYEIPEDDELDELASIPQWFKKNVTSN-IFKNFLH 101
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 360 LHPTSALFGLGCSPDYVVYHELTMTAREYMHCV 262
LHP FGL C ++ + A+ Y+HCV
Sbjct: 119 LHPVG--FGLACHLGVLLNLPVVGVAKNYLHCV 149
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 444 ICSAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSP 319
IC + FQ A +GI E +NC + H + + +G SP
Sbjct: 1120 ICLSIFQ-CADYRGINEILNCWESIIKTTHENAIISPVGSSP 1160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,260
Number of Sequences: 5004
Number of extensions: 47275
Number of successful extensions: 208
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -