Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g09
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...    84   2e-16
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...    83   2e-16
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...    82   5e-16
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760...    80   2e-15
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    79   4e-15
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...    77   1e-14
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593...    72   5e-13
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007...    54   1e-07
06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509...    30   2.6  
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835...    30   2.6  
02_02_0106 + 6814391-6817007,6817086-6817462                           29   4.6  
04_04_1588 - 34633057-34633824                                         28   8.1  

>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 39/46 (84%), Positives = 41/46 (89%)
 Frame = -3

Query: 838 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 701
           KQAFDDAIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD   DG +
Sbjct: 202 KQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247


>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 38/46 (82%), Positives = 42/46 (91%)
 Frame = -3

Query: 838 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 701
           KQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 207 KQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 40/50 (80%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
 Frame = -3

Query: 838 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEPAE 692
           KQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+  GDE  E
Sbjct: 197 KQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246


>11_06_0036 +
           19474848-19475188,19475696-19475774,19475880-19476002,
           19476970-19477086,19477169-19477228
          Length = 239

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = -3

Query: 838 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 701
           KQAFD+AI+ELD+L E+SYKDSTLIMQLLRDNLTLWTSD   DG +
Sbjct: 180 KQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 37/46 (80%), Positives = 41/46 (89%)
 Frame = -3

Query: 838 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 701
           KQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   D  E
Sbjct: 203 KQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 35/39 (89%), Positives = 39/39 (100%)
 Frame = -3

Query: 838 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 722
           KQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 421 KQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459


>01_01_0767 +
           5931031-5931281,5931414-5931594,5932020-5932129,
           5932212-5932360,5932686-5932738,5933168-5933260
          Length = 278

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 33/52 (63%), Positives = 40/52 (76%)
 Frame = -3

Query: 838 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 683
           K AFD+A+AEL +L+E++YKDSTLIMQLLRDNL LW SD   D D+  E  D
Sbjct: 187 KNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238


>11_06_0360 -
           22699524-22699529,22699865-22699899,22700650-22700792,
           22701165-22701220,22701367-22701454,22702737-22703037,
           22704365-22704428
          Length = 230

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = -3

Query: 838 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 713
           KQA D+A AE+++   + YKDS L+MQLL++NL LWTS+  G
Sbjct: 176 KQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217


>06_03_0836 -
           25249491-25249511,25249883-25250050,25250721-25250920,
           25251000-25251324,25251981-25252045,25252231-25252552,
           25252650-25252730
          Length = 393

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 330 GQVTFLSPHDRSEGDYGVFRFD-SYSFSNDTFHNVLNGCTKTW 205
           G   FL+ HD SEG+  +FR++ +  F+ + F  + NGC K +
Sbjct: 204 GWAPFLAAHDLSEGNILLFRYEGNMVFTVEVF--LQNGCLKEY 244


>05_07_0236 -
           28582157-28582552,28582639-28582911,28583324-28583560,
           28583653-28583694,28583782-28583964,28584393-28584524,
           28585605-28586057
          Length = 571

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 258 NMSQIGIHHNLLHCGHAAIGMLLGRP 335
           N  Q+ IHH+ L CG+A I  +  +P
Sbjct: 326 NSKQVSIHHSNLACGNALINSIKAKP 351


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 632 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 474
           CL +N  H   S   +SSP PT    C N+K        F  KL N ++SL  L
Sbjct: 93  CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146


>04_04_1588 - 34633057-34633824
          Length = 255

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 644 KCVCWGECGEILVVAALGRLVAIALSV*RPK 736
           +CVCW     +++  ALG    I  +V +PK
Sbjct: 68  RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,480,626
Number of Sequences: 37544
Number of extensions: 363611
Number of successful extensions: 839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)