Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g07
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475...    33   0.22 
11_06_0664 + 26048249-26048764,26048916-26050142                       31   1.2  

>07_01_0635 +
           4753919-4754090,4754200-4754258,4754377-4754432,
           4754698-4754842,4755506-4755580,4755844-4755933,
           4756218-4756295,4757879-4758376,4758512-4758997
          Length = 552

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +1

Query: 379 FFYCPCRLTSIRPTRW*VVTVVHGLQQCQGQSQAVKLVTPWRGA*FYRIHQYL 537
           F +  CR+TS   +R+  +TV  GL+  +G   AV  V  W+G  F    Q L
Sbjct: 111 FPFSECRVTSEALSRYYDITVGSGLKAVKGSRVAVHYVAKWKGITFMTSRQGL 163


>11_06_0664 + 26048249-26048764,26048916-26050142
          Length = 580

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 460 CQGQSQAVKLVTPWRGA*FYR-----IHQYL*VHPFQFHISL 570
           CQG++ A +LV  WR A  +R     I  YL V PF  HI +
Sbjct: 88  CQGRAAAYRLVMAWRQAERFREVQSKIDSYLLVFPFISHIDI 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,015,088
Number of Sequences: 37544
Number of extensions: 377560
Number of successful extensions: 775
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)