Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10g05
(725 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30 pro... 108 2e-23
L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30 pro... 108 2e-23
BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30 p... 108 2e-23
BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30 p... 108 2e-23
AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30 p... 108 2e-23
X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein. 34 0.45
U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor... 34 0.45
BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation ... 34 0.45
BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation ... 34 0.45
BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein. 34 0.45
AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein. 34 0.45
BX322644-3|CAI18448.2| 258|Homo sapiens tripartite motif-contai... 30 9.7
BX322644-2|CAM25692.1| 229|Homo sapiens tripartite motif-contai... 30 9.7
BX005441-3|CAM26236.1| 229|Homo sapiens tripartite motif-contai... 30 9.7
BX005441-2|CAM26235.1| 258|Homo sapiens tripartite motif-contai... 30 9.7
BC060785-1|AAH60785.1| 258|Homo sapiens TRIM40 protein protein. 30 9.7
AL671859-9|CAM24935.1| 258|Homo sapiens tripartite motif-contai... 30 9.7
AL671859-8|CAI17585.1| 229|Homo sapiens tripartite motif-contai... 30 9.7
AL669914-9|CAI18185.2| 258|Homo sapiens tripartite motif-contai... 30 9.7
AL669914-8|CAM25505.1| 229|Homo sapiens tripartite motif-contai... 30 9.7
AF489517-1|AAM09503.1| 229|Homo sapiens TRIM40 protein. 30 9.7
AB202084-1|BAE78604.1| 229|Homo sapiens ring finger protein 40 ... 30 9.7
AB110940-1|BAD13706.1| 229|Homo sapiens TRIM40 protein protein. 30 9.7
AB110939-1|BAD13705.1| 229|Homo sapiens TRIM40 protein protein. 30 9.7
>X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 108 bits (260), Expect = 2e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 161 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 12
RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 92.7 bits (220), Expect = 1e-18
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -2
Query: 652 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LR
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
>L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 108 bits (260), Expect = 2e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 161 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 12
RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 92.7 bits (220), Expect = 1e-18
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -2
Query: 652 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LR
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
>BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 108 bits (260), Expect = 2e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 161 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 12
RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 92.7 bits (220), Expect = 1e-18
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -2
Query: 652 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LR
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
>BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 108 bits (260), Expect = 2e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 161 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 12
RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 92.7 bits (220), Expect = 1e-18
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -2
Query: 652 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LR
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
>AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 108 bits (260), Expect = 2e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = -1
Query: 161 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 12
RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 56 RKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
Score = 92.7 bits (220), Expect = 1e-18
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -2
Query: 652 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LR
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALR 56
>X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.45
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 583 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor 1
protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.45
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 583 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.45
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 583 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297
>BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.45
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 583 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.45
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 583 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297
>AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.45
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 583 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 485
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BX322644-3|CAI18448.2| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX322644-2|CAM25692.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX005441-3|CAM26236.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX005441-2|CAM26235.1| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BC060785-1|AAH60785.1| 258|Homo sapiens TRIM40 protein protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL671859-9|CAM24935.1| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL671859-8|CAI17585.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL669914-9|CAI18185.2| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL669914-8|CAM25505.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AF489517-1|AAM09503.1| 229|Homo sapiens TRIM40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB202084-1|BAE78604.1| 229|Homo sapiens ring finger protein 40
protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB110940-1|BAD13706.1| 229|Homo sapiens TRIM40 protein protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB110939-1|BAD13705.1| 229|Homo sapiens TRIM40 protein protein.
Length = 229
Score = 29.9 bits (64), Expect = 9.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 17 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 124
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,057,897
Number of Sequences: 237096
Number of extensions: 2106442
Number of successful extensions: 3182
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3182
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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