Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10g04
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 50 5e-07
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 44 3e-05
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 37 0.003
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 35 0.017
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 33 0.038
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 33 0.038
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 32 0.089
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 32 0.12
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 31 0.15
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.27
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.27
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 0.36
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 29 0.62
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.62
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 29 0.62
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.62
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 1.1
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 2.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.3
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 27 3.3
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.3
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 27 3.3
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 4.4
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 4.4
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 27 4.4
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 4.4
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 5.8
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 26 5.8
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 5.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 5.8
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 5.8
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 7.7
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 7.7
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 7.7
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 49.6 bits (113), Expect = 5e-07
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = -1
Query: 647 QKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISN--TLL 474
Q I +Q QNR LK+E + + ++KAL E N+SL++A +++ + E +N T +
Sbjct: 314 QNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEM 373
Query: 473 KKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQE 360
K+ + KE L HY+ + +SR LR++
Sbjct: 374 KEARQKLNNKEALISHYDDDFRAKELKISRLSESLREK 411
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 44.0 bits (99), Expect = 3e-05
Identities = 28/100 (28%), Positives = 49/100 (49%)
Frame = -1
Query: 680 LPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQE 501
L S ++ + I L+ +N LK L+ R AL EN+SLR+A+ +Q +++
Sbjct: 79 LQSSNNQAEESRNLISVLRNENESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIA 138
Query: 500 EEYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRK 381
E +S +I+AL+ E L + + L++ RK
Sbjct: 139 SEQLS-IAKDQIEALQNENSHLGEQVQSAHQALSDIEERK 177
Score = 32.3 bits (70), Expect = 0.089
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Frame = -1
Query: 608 LKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQ-EEEYISNTLLKKIQALKKEKETLA 432
LK EL + + ++ L +E L+ ++++K+E E E N KI+ L+ + LA
Sbjct: 1322 LKNELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQ--SKIEQLELKNTKLA 1379
Query: 431 HHYEREEECLTNDLSRKLNQLRQEKCRXXXXXXXXXXXLVNKLMRKIEKLEAETLAKQTN 252
+ + E + N K NQ+RQ+ + ++L ++ K A A T
Sbjct: 1380 AAWRTKYEQVVNKSLEKHNQIRQQLSQ-KTSELEAKVAECHQLNEQLNKPSATPTA--TT 1436
Query: 251 XXXXXXXXXXXENTLEQEQEALVNRLWKRMDKLEAEKRSLQ 129
N+ ++E + +L + MD L K L+
Sbjct: 1437 QSEPSTVSLEEFNSTKEELSSTQRKLSEIMDILNTTKEELE 1477
Score = 30.7 bits (66), Expect = 0.27
Identities = 26/98 (26%), Positives = 47/98 (47%)
Frame = -1
Query: 656 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 477
+QLQ + ++ +K E D Y+L+ E+N L+ S+ Q ++E S++L
Sbjct: 943 EQLQAASKLAEEMVERVKTEYDEYRLQTSESLEKNH-LKITSLE-QRIVILQDEIASSSL 1000
Query: 476 LKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQ 363
+ + + K+ ET E + L N+LS N +Q
Sbjct: 1001 --RCENITKDSETRVALLLEENKHLNNELSSHRNAEKQ 1036
Score = 29.9 bits (64), Expect = 0.47
Identities = 26/108 (24%), Positives = 51/108 (47%)
Frame = -1
Query: 674 PSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEE 495
PSTVS ++ E L R L +D + +EE +RQ S + ++ + E
Sbjct: 1440 PSTVSLEEFNSTKEELSSTQRKLSEIMDI----LNTTKEELEKVRQNSNKSEGTSK-DTE 1494
Query: 494 YISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQEKCR 351
+ +++ + +++E L +E + N+L RK NQ+ Q++ +
Sbjct: 1495 IPNEEEMERKKVMQQEVLRLRSRIAKELQ--KNELLRKQNQVLQDQVK 1540
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 653 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQA-SVSIQAKAEQEE 498
+L+ RI Q+N +L+ + + +VKALQE S +A S S+ A + E
Sbjct: 1513 RLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASVHADTKDLE 1565
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Frame = -1
Query: 656 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 477
+ L ++ E+ + Q + ++E +T +LR+KA E+ + +S + + +EE ++ L
Sbjct: 44 ESLSRKSEAAESQ--LEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKL 101
Query: 476 LKKIQALKKEKETLAHHYEREEECL---TNDLSRKLNQL 369
L++ ++ + A H+ER + L +D+ +KL ++
Sbjct: 102 LRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEM 140
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 34.7 bits (76), Expect = 0.017
Identities = 26/133 (19%), Positives = 63/133 (47%)
Frame = -1
Query: 656 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 477
++ R+E + ++ L+ ++ + + L E +S+ + + Q + + +S+TL
Sbjct: 891 ERANSRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSD-LSSTL 949
Query: 476 LKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQEKCRXXXXXXXXXXXLVNKLMR 297
KK+ ++KK+++T++ Y+ E+ N ++ Q + + +L
Sbjct: 950 EKKLSSIKKDEQTISSKYKELEKDYLNIMAD--YQHSSQHLSNLEKAINEKNLNIRELNE 1007
Query: 296 KIEKLEAETLAKQ 258
K+ +L+ E L KQ
Sbjct: 1008 KLMRLDDELLLKQ 1020
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 33.5 bits (73), Expect = 0.038
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = -1
Query: 665 VSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASV--SIQAKAEQEEEY 492
+ + Q +KRI L+++ L+ +++ + + R + S SIQ E+
Sbjct: 106 LQKSQFEKRISILEKEKEDLQRKMEELTVESMEVVRLTRQVETLSTQYSIQRSQWVREDE 165
Query: 491 ISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQL 369
++ ++ L ++ E A ++ERE E N +S+ QL
Sbjct: 166 KKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQL 206
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 33.5 bits (73), Expect = 0.038
Identities = 16/75 (21%), Positives = 40/75 (53%)
Frame = -1
Query: 659 RDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNT 480
RD L+ ++++L+ N L++ + ++++L+ +NR + + ++ A + +
Sbjct: 437 RDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLASKNSDKALAE 496
Query: 479 LLKKIQALKKEKETL 435
++Q + KE ETL
Sbjct: 497 TNIRLQEVTKELETL 511
Score = 25.8 bits (54), Expect = 7.7
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -1
Query: 650 LQKRIESL--QQQNRVLK--VELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYIS 486
L+KR+ES+ +Q +K VEL + ++ + SL Q S K E++ +Y+S
Sbjct: 175 LEKRLESMAPEQIKEAVKDNVELHAERANLQLQLKRTESLLQKSEDKNFKLEEKVDYLS 233
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 32.3 bits (70), Expect = 0.089
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Frame = -1
Query: 665 VSRDQLQKRIESLQQQNRVL---KVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEE 495
+ R+ +K E L Q + K ELD ++R++ALQ + L+ I+ E+E
Sbjct: 51 ILREANRKSYEQLVQAKTITAEHKSELDNARIRLQALQYKKLHLK---TIIKNYEEKEHI 107
Query: 494 YISNTLLKKIQALKKEKE-TLAHHYEREEECLTNDLS--RKLNQLRQEKCRXXXXXXXXX 324
Y + L+ K + LK+ E ++ ++ L ++L ++L+ L+QE +
Sbjct: 108 YTALPLVSKEEFLKEHPEFKSSNDHDLMLAILEDELKERQRLSTLKQELLKRKAALISEN 167
Query: 323 XXLVNKLMRKIEKLE 279
N L + EKL+
Sbjct: 168 KAKRNALQKGDEKLQ 182
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = -1
Query: 662 SRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISN 483
S+++L + L++ N V+ EL++ KL++ EE S++ + + +++ E N
Sbjct: 483 SQEELLQLNAKLEKANIVID-ELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYEN 541
Query: 482 TLLKKIQALK-KEKETLAHHYER 417
+ +I + KE ETL YE+
Sbjct: 542 EVNSEITSRTLKEFETLKTQYEK 564
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 31.5 bits (68), Expect = 0.15
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = -1
Query: 665 VSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQ-----E 501
++ + L+++ + L+++N LKVE + + L+EE L++ ++K E+ +
Sbjct: 98 LASETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLKKKCNVYKSKFEESSLRCK 157
Query: 500 EEYISNTLLK-KIQALKKEKET 438
Y SNT LK ++ +K+ ET
Sbjct: 158 SLYSSNTKLKDSMETMKRRMET 179
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 30.7 bits (66), Expect = 0.27
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = -1
Query: 650 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLK 471
L +R L + N ++ R K+ ++N+ + + S A E++ + N+L K
Sbjct: 254 LNERATKLSEANENFNNRFKEFEEREKSAIKQNKE-QSSEGSKTANQTHEQKELINSLEK 312
Query: 470 KIQALKKEKETLAHHYEREEECLTN--DLSRKLNQL 369
K+ + EK+ L ER + + + R+L +L
Sbjct: 313 KVSDIALEKQLLEEAVERYKLAMVEFAECQRRLKEL 348
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 30.7 bits (66), Expect = 0.27
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = -1
Query: 653 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLL 474
+ ++ +SLQ+ ELD + + E + +R + + K+ Q+E +S + L
Sbjct: 975 EFNEQCKSLQETIVTKDAELDKLTKYISDYKTEIQEMRLTNQKMNEKSIQQEGSLSES-L 1033
Query: 473 KKIQALKKEKETL 435
K+++ L++E TL
Sbjct: 1034 KRVKKLERENSTL 1046
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 30.3 bits (65), Expect = 0.36
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = -1
Query: 602 VELDTYKLRVKALQEENRSLRQASVSIQAK-AEQEEEYISNTLLKKIQALKKEKETLAHH 426
V+++ + R+KALQ + LR+ ++++ K A+ + E ++ + K ETL
Sbjct: 615 VQMERFAERIKALQYQRMRLRKMMLNLEPKLAKSKPELLAKEEGITDSWIVKHHETL--- 671
Query: 425 YEREEECLTNDLSRKLNQLRQE 360
YE E+E + R+ +L E
Sbjct: 672 YELEKEKIKKKFDRENEKLAAE 693
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 29.5 bits (63), Expect = 0.62
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 194 EALVNRLWKRMDKLEAEKRSLQIRLDQPVSDPAS 93
E + NR WKR+ L++ + + +RL QP DP S
Sbjct: 83 EEIDNRHWKRLGALKSNGKDIPLRLIQPY-DPLS 115
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.5 bits (63), Expect = 0.62
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 644 KRIESL-QQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKK 468
KR++ L +++ R+ K E K K LQ+E + A A+Q I+NT
Sbjct: 723 KRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAHADQA---IANT--GP 777
Query: 467 IQALKKEKETLAHHYEREEE 408
+ E ET HYE EEE
Sbjct: 778 VAPPYFEHETEPSHYEEEEE 797
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 29.5 bits (63), Expect = 0.62
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = -1
Query: 515 KAEQEEEYISNT----LLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQ 363
+ + E +I+N+ L KK+Q E TL+H E+E L N L RK+N+L++
Sbjct: 19 RENENELHINNSGMSELNKKLQLPNVELSTLSHTQEQEFNEL-NKLIRKINELQE 72
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.62
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Frame = -1
Query: 650 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL-- 477
++K ++ L + VEL+ + L EEN ++ ++++ K++++ + +N +
Sbjct: 1079 IEKNVQKLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDD 1138
Query: 476 LKK----IQALKKEKETLAHHYER---EEECLTNDLSRKLNQLRQEK 357
LK+ ++ L EK L E+ E L + S N+L K
Sbjct: 1139 LKEKSDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMK 1185
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/96 (20%), Positives = 48/96 (50%)
Frame = -1
Query: 647 QKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKK 468
+ ++ S +Q+N+ LK +D Y+ L +++ ++Q VS Q + + + L +
Sbjct: 391 ESKLSSFEQENKSLKGSIDEYQ---NNLSSKDKMVKQ--VSSQLEEARSSLAHATGKLAE 445
Query: 467 IQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQE 360
I + + + +E+ E+ L L+ N+L+++
Sbjct: 446 INSERDFQNKKIKDFEKIEQDLRACLNSSSNELKEK 481
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = -1
Query: 653 QLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLL 474
QLQ + +Q+ L E + + ++ L+E N+SL + + + E+ + + L
Sbjct: 641 QLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDS-LEKNIQTLKEDLR 699
Query: 473 KKIQALKKEK 444
K +AL+ K
Sbjct: 700 KSEEALRFSK 709
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = -1
Query: 623 QQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEK 444
++ ++ K ++R K + R ++ Q K +E+E I+ +K+++ L+KE+
Sbjct: 76 KEKKLQKQRAQEERIRQKEAERLKRE-KERQQREQEKKLREQEKIAAKKMKELEKLEKER 134
Query: 443 ETLAHHYEREEE 408
L R+EE
Sbjct: 135 IRLQEQQRRKEE 146
Score = 25.8 bits (54), Expect = 7.7
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = -1
Query: 599 ELDTYKLRVKALQEENRSLRQASVSIQA----KAEQEEEYISNTLLKKIQALKKEKETLA 432
E D Y ++ E NR R + S +A K +++ K+ + LK+EKE
Sbjct: 49 EADEYVCKLS--YEGNRKKRIYNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQ 106
Query: 431 HHYE---REEECLTNDLSRKLNQLRQEKCR 351
E RE+E + ++L +L +E+ R
Sbjct: 107 REQEKKLREQEKIAAKKMKELEKLEKERIR 136
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Frame = -1
Query: 671 STVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEY 492
ST+ D+ + I SL ++ L K R L+ L +A K ++ E
Sbjct: 106 STLEHDKSKPVISSLIDED----ANLSQIKARKSVLESRFSRLEEAFRDFYIKNLEKTED 161
Query: 491 ISNT-----LLKKIQALKKEKETLAHHYEREEECLTNDL 390
+ T L K++ + + + E HYE+ +CL L
Sbjct: 162 LIRTDSHFVLNKELLSFRNDYEHRRKHYEKYSQCLNKQL 200
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.5
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 6/179 (3%)
Frame = -1
Query: 656 DQLQKRIESLQQQ-NRVLK---VELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYI 489
+Q + +E LQ+ N V++ ++ K + K R + S Q E ++
Sbjct: 420 EQTCQEVERLQRSYNHVMEEANLQHPLVKEQFKRFAHMQREIVAMSEQYQKSLEDCQK-- 477
Query: 488 SNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQE--KCRXXXXXXXXXXXL 315
+ + ++++ L K+K T HYE+E T DL+R++ L E C
Sbjct: 478 AKSRYEQLETLFKDKCTENKHYEQE----TKDLARQVQVLLHELDLCENGIVLGVDSRKK 533
Query: 314 VNKLMRKIEKLEAETLAKQTNXXXXXXXXXXXENTLEQEQEALVNRLWKRMDKLEAEKR 138
+N + K E ET Q L+Q+ + L++ + + D++E +++
Sbjct: 534 INSYVEK-SLTEDETDTDQ--IISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEK 589
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.3
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = -1
Query: 584 KLRVKALQEENRSLRQAS-VSIQAKAEQEEEYISNTLLKKI--QALKKEKETLAHHYER- 417
K ++K +EE R R+A ++ QA + E KK Q LK+E+E ER
Sbjct: 601 KKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQ 660
Query: 416 --EEECLTNDLSRKLNQLRQEKCR 351
EE+ + +KL + +QE R
Sbjct: 661 KREEKQKQKEREKKLKKQQQEADR 684
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -1
Query: 572 KALQEENRSLRQASVSIQAKAEQEE--EYISNTLLK--KIQALKKEKET-LAHHYEREEE 408
+ + EENR + ++ + QEE I + LL+ K +A KK+ E LA +R +
Sbjct: 78 QGIDEENRVRLERMNDLEIEGAQEEIRATIRDDLLEMLKKRAFKKKAERELAQRKDRSSQ 137
Query: 407 CLTNDLSRK 381
T DLS++
Sbjct: 138 VNTPDLSQR 146
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/91 (23%), Positives = 43/91 (47%)
Frame = -1
Query: 656 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 477
D+LQKR+++L+++N K + D+ L++ L+ + + ++ EE
Sbjct: 623 DELQKRLQTLEEENN--KAKEDSTSKTSNLLEQ----LKMTEAEVDSLRKENEENKQVIA 676
Query: 476 LKKIQALKKEKETLAHHYEREEECLTNDLSR 384
LK+ + +K L + E L + LS+
Sbjct: 677 LKESELVKSNDNKLL--LNEQIESLNDQLSQ 705
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -1
Query: 683 MLPPSTVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQ 504
+L S Q Q+ + S Q ++L E + +EN S A++ + +
Sbjct: 5 LLRDSVKKASQFQRSLHSDPNQAKILLEERRKLLEEANSSADENDSHSMATIKSHFERLK 64
Query: 503 EEEYISNTLLKKIQA 459
+E + N +LKK A
Sbjct: 65 RDEQLLNGVLKKYDA 79
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 587 KYLTPLSKLYFVAVEIQFFSVVDHEKQYSEEALRHRQVNWSHFRT 721
K LT K F A E + SVV+ E +Y E ++ ++ +W F +
Sbjct: 178 KSLTSSCKFLFEAKE-RLTSVVETEHEYYTELVKVKEASWPLFNS 221
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -1
Query: 632 SLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVS-IQAKAEQEEEYISN-TLLKKIQA 459
SLQ++N L+ ELD ++ Q RS +Q ++ ++A+ E ++ + T +KK
Sbjct: 47 SLQEKNAELRAELD----NIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTVP 102
Query: 458 LKKEKETLAH 429
K E E H
Sbjct: 103 FKSEVELDKH 112
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 290 LFFSSIYLPNIPALVPMFVQDDTFLVSTDLIFLI 391
++ SS+++P+IP L F + +T +V +++I
Sbjct: 53 MYGSSVFMPSIPELCEKFGEPETLVVLGATLYVI 86
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -1
Query: 581 LRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECL 402
LRV + ++R ++SVS + EQ + Y N L+++ L+ E L+ E++ L
Sbjct: 467 LRVVRVAAKSREDIESSVSFLSLHEQIKNYKFNPELQRLLKLRSENNELSIQDEKKLRIL 526
Query: 401 TNDLSRKL 378
++L
Sbjct: 527 VAAAEKEL 534
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = -1
Query: 671 STVSRDQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSL 543
+T+ DQL++++ L+++ R+LK T+++ +L N SL
Sbjct: 118 TTLENDQLRQKVRQLEEELRILKDGSFTFEM---SLPHRNPSL 157
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 169 FQSLFTSASCSCSNVFSNSTFSLRSLSKFVCFARVSASSFSI 294
F+S +C+ S + TF+ RS +K C R+S S S+
Sbjct: 54 FESEKIKIACTVSGPRPSKTFAFRSSAKLNCEFRLSPFSTSV 95
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -1
Query: 677 PPSTVSRDQLQKRIESLQQQN--RVLKVELDTYKL-RVKALQEENRSLRQASVSIQAKAE 507
P S + D ++ + L + ++ + DT+ L +K L+EE LR S+ +
Sbjct: 336 PVSLDAVDGIELSLRDLNDEESLQLKRARYDTFGLGNIKDLEEEEEKLRSVEGSLNEELS 395
Query: 506 QEEE 495
+EE+
Sbjct: 396 EEEK 399
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 542 RQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYER 417
R+ + + ++ EQEEEY S + IQ K +K L +R
Sbjct: 1805 RKKKLVLPSQVEQEEEYWSGLMEVTIQIWKHDKGFLEPELDR 1846
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/70 (21%), Positives = 39/70 (55%)
Frame = -1
Query: 578 RVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLT 399
+++ L +EN +L+ ++ + +EEY++ L++K++ ++K+ + + E+E
Sbjct: 95 KIEKLLKENGTLKNEEKCLRMQIVAQEEYVA-PLIQKLEIIEKKLDK-SFRKNMEDELRI 152
Query: 398 NDLSRKLNQL 369
L+ + N L
Sbjct: 153 TRLASENNVL 162
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.8 bits (54), Expect = 7.7
Identities = 22/89 (24%), Positives = 41/89 (46%)
Frame = -1
Query: 650 LQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTLLK 471
LQ++I LK ++ T+K + +AL + LRQ + + +K +Q + S+
Sbjct: 456 LQEQIHQNDDLIESLKNQILTWKNKYEALAKLYTQLRQEHLDLLSKYKQIQLKASSAQEA 515
Query: 470 KIQALKKEKETLAHHYEREEECLTNDLSR 384
+ K E+E + E + L D +R
Sbjct: 516 IDKKEKMEREMKNKNLELADMILERDRAR 544
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 497 EYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLNQLRQE 360
EY ++ +KK++ E E YE E+ + K++ LR E
Sbjct: 343 EYENDLTVKKLKRRISELEMAVKEYESEKSYSEKEYEEKISSLRIE 388
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 7.7
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = -1
Query: 656 DQLQKRIESLQQQNRVLKVELDTYKLRVKALQEENRSLRQASVSIQAKAEQEEEYISNTL 477
+QLQ+ + S LK LD V+ L+ NR+L K +E+ Y
Sbjct: 377 EQLQRELASETVVKENLKSSLDQQSANVQKLESTNRALEST-----IKTLEEDVYTMKNK 431
Query: 476 LKKIQALKK----EKETLAHHYEREEECLTNDLSRKLNQLRQE 360
+ +++ + K E++ L EE L RKL+ QE
Sbjct: 432 IIELEGILKSANVERDGLVEKLIAEE-----TLRRKLHNTIQE 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,967
Number of Sequences: 5004
Number of extensions: 60817
Number of successful extensions: 261
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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