Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10g03
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    23   5.1  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    23   8.9  

>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 5   CITKALCWSPNALNALTTYKNFYCAFAXT 91
           CI    C +  A NAL   K   CAF  T
Sbjct: 70  CINHLRCGTTVATNALLERKGERCAFITT 98


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 353

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 14 KALCWSPNALNALTTYKNFYCAF 82
          K L W  +  +  T YK+FY  F
Sbjct: 18 KDLTWDLSRSHLTTQYKSFYMCF 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,152
Number of Sequences: 5004
Number of extensions: 5408
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)