Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10g01
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68116-3|CAA92175.1| 178|Caenorhabditis elegans Hypothetical pr... 129 2e-30
U80455-6|AAB37884.1| 159|Caenorhabditis elegans Hypothetical pr... 118 5e-27
U23173-1|AAC46708.1| 221|Caenorhabditis elegans Hypothetical pr... 112 2e-25
U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical pr... 31 0.96
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 31 0.96
Z29115-3|CAA82361.1| 347|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL031632-4|CAA21007.1| 451|Caenorhabditis elegans Hypothetical ... 28 5.1
Z73976-2|CAA98285.1| 360|Caenorhabditis elegans Hypothetical pr... 28 6.8
AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical... 28 6.8
AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical... 28 6.8
U88315-16|AAK68237.1| 414|Caenorhabditis elegans Hypothetical p... 27 9.0
AF016657-12|AAB93656.1| 278|Caenorhabditis elegans Hypothetical... 27 9.0
>Z68116-3|CAA92175.1| 178|Caenorhabditis elegans Hypothetical
protein F42F12.4 protein.
Length = 178
Score = 129 bits (312), Expect = 2e-30
Identities = 62/177 (35%), Positives = 97/177 (54%), Gaps = 2/177 (1%)
Frame = -1
Query: 586 AWYMDSETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNERGYT 407
A++M T + R + P + ++ + GVE K+N D L++L +
Sbjct: 2 AYFMTDVTKENRQDECRFSPNKEATEEDLLRIGVECTKVNFDDEHVQEDLDRLIKKYDMN 61
Query: 406 YEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIAVSKG 227
+ DE+ + +PN++EK+ F+ EHLH D E+R I G G+FDVR ++ WIRI V +G
Sbjct: 62 FHDEVHICRATMPNFDEKLDIFFEEHLHDDAELRVIKHGVGFFDVRTKDEAWIRIPVRRG 121
Query: 226 DMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPA--DEMPCRKDYVEKLQS 62
D + +P+GIYHRFT D + + A R F P W +NR A DE R+ Y+ + +
Sbjct: 122 DFVFLPAGIYHRFTTDPSEDVVALRLFRNNPKWTAFNRKADGDEQRVRQQYLNDISA 178
>U80455-6|AAB37884.1| 159|Caenorhabditis elegans Hypothetical
protein T01D1.4 protein.
Length = 159
Score = 118 bits (283), Expect = 5e-27
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Frame = -1
Query: 592 VQAWYMDS-ETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINID-TYKTDGVLEKLKNE 419
+Q W+M+ D+RL HH PP+ I+ L GV+Y+K+++D T L +K E
Sbjct: 1 MQIWHMEPFPCGDRRLPHHVFPPKKITTTQLGQLAGVQYYKVDLDDTASMKKRLSAVKTE 60
Query: 418 RGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIA 239
+ T+ D S+ L +++K++ FY + ++ I +++G+ Y+DV +D WIR+
Sbjct: 61 KNVTFTDMFTVSETML-EFDDKMEQFYEPQVQKEDVISLVVEGTCYYDVEPEDDSWIRVQ 119
Query: 238 VSKGDMLVIPSGIYHRFTLDTNNYIKAKRFF 146
V KGD++VIP G+ HRFT N++K +RFF
Sbjct: 120 VEKGDLIVIPKGLSHRFTTTPQNFVKIQRFF 150
>U23173-1|AAC46708.1| 221|Caenorhabditis elegans Hypothetical
protein K07E1.1 protein.
Length = 221
Score = 112 bits (269), Expect = 2e-25
Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Frame = -1
Query: 607 FVFKMVQAWYMDSETT-DQRLQHHKNPPEYISLDDLFSKTGVEYFKIN-IDTYKTDGVLE 434
F KMVQ W M+ D RL HH PP+ I+ D+L +TG Y+K++ +D L
Sbjct: 60 FQLKMVQIWQMEPYPCGDPRLPHHLFPPKKITPDELSKRTGTLYWKLDTLDQVALAKRLT 119
Query: 433 KLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQ 254
LK E + ED E N+++KI+ + E E+ R I++G+ Y+DV D Q
Sbjct: 120 TLKLEHSFKKEDIFTLDAETTANFDDKIEELFEESSVPFEQARMIIEGTAYYDVEDKNGQ 179
Query: 253 WIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGE 137
W+RI GD+++IP+ RFT +N++K +RF+ E
Sbjct: 180 WVRIFCEYGDLILIPANTCFRFTTTPHNFVKMRRFYKDE 218
>U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical
protein C15B12.2 protein.
Length = 269
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 518 NIFWRIFMVLQPLVRCFTIHVPCLYHFKNKNN 613
++FW I + LV + +PCLYH+ ++N
Sbjct: 60 HMFWYILTFITYLVWTLLLWIPCLYHYTCRHN 91
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 1 VIYSLEKKCQFYYIMLLLRIRSVVSQRSLSGTASHQPAYCKATKPAHR*RNVL 159
V Y L K+ ++LL R V S SGT+ H P A+ PAHR + +L
Sbjct: 42 VAYHLTKR-NIKDVLLLERASGVASP---SGTSFHSPGLVSASHPAHRYKPIL 90
>Z29115-3|CAA82361.1| 347|Caenorhabditis elegans Hypothetical
protein T26G10.4 protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 264 VRINGSVLPCPRETCWSSRAVSTTGSLWTP 175
++ G +PCPR T + VST LW+P
Sbjct: 150 IKDGGLGVPCPRVTNMVTFVVSTMKKLWSP 179
>AL031632-4|CAA21007.1| 451|Caenorhabditis elegans Hypothetical
protein Y32B12B.5 protein.
Length = 451
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = -1
Query: 643 KLFTYVHI*LIIFVFKMVQAWYMDSETTDQRLQHHKNPPEYISLDD-LFSKTGVEYFKIN 467
+L TY H+ VF ++ AW E Q + H K+P + +D L + G+ F
Sbjct: 159 QLGTYRHLMCAFAVFSLIYAWI---EVFTQPVMHTKDPVFIVFMDSPLKYQAGIGNFVTC 215
Query: 466 IDTYKTDGVLEKLKNERGYTYEDEMVCSKECLPNYE 359
+ V+ L + ++Y VC E LP +
Sbjct: 216 LYCGSFALVISLLAAQ--FSYRFIAVCRPEILPKLD 249
>Z73976-2|CAA98285.1| 360|Caenorhabditis elegans Hypothetical
protein T07C12.6 protein.
Length = 360
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 398 IFICVTSFILKFF*YSISFICVYVYFKI 481
I + +T I FF + I+ +C+ VY KI
Sbjct: 30 IIVSITELIFYFFAFYINSVCLKVYLKI 57
>AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical
protein Y37E3.17b protein.
Length = 837
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 82 SLSGTASHQPAYCKATKPAHR*RNVL 159
S SGT+ H P A+ PAHR + +L
Sbjct: 72 SPSGTSFHSPGLVSASHPAHRYKPIL 97
>AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical
protein F41G4.8 protein.
Length = 242
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/88 (22%), Positives = 39/88 (44%)
Frame = -1
Query: 580 YMDSETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNERGYTYE 401
Y+ S + Q + E +D+ + + +E + I Y T + N + + E
Sbjct: 7 YLLSAAVSCQFQDFEGSGEEALIDEYWLQRLIE--NVGIPHYLTQKAYQLTANAKEHVDE 64
Query: 400 DEMVCSKECLPNYEEKIKSFYTEHLHTD 317
DE++ +P+Y ++ F T+ L TD
Sbjct: 65 DEILTLDASVPDYARQV--FTTQVLSTD 90
>U88315-16|AAK68237.1| 414|Caenorhabditis elegans Hypothetical
protein C37H5.13a protein.
Length = 414
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 104 ISRPIVRQPNRLTDEETFCFYVVIGVQSEPVVDTARDDQH 223
+ RPI+ Q +R+ D ++FC +V +Q + T + H
Sbjct: 166 VERPILYQVDRIRDGKSFCTRLVKALQDGEAIFTVQISFH 205
>AF016657-12|AAB93656.1| 278|Caenorhabditis elegans Hypothetical
protein C16C4.11 protein.
Length = 278
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 600 LKWYKHGTWIVKQRTSGC 547
+KW K GTWI R S C
Sbjct: 88 MKWTKRGTWIFLTRPSRC 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,521,336
Number of Sequences: 27780
Number of extensions: 385109
Number of successful extensions: 1086
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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