Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10f24
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.049
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 1.8
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 2.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.4
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 3.2
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 27 4.2
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 26 5.6
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 7.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 7.4
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.4
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 9.8
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 9.8
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.1 bits (72), Expect = 0.049
Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +1
Query: 280 TSLEPNRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAV 459
+SL + +PS +S PTS ++ S ++ + + + S+ L S ++
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSL 235
Query: 460 SRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATV---NFCVRSSILAITSFVS 630
S + S + S+S +T SL++ S AS+ S+ +++ + SS + +S +S
Sbjct: 236 S----TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 631 ISTAGAYLPVHST*GMTSSKSHS 699
S++ + P ++ ++SS S S
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSS 314
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 620 DVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLAN 441
D +KID LT+KL VAN AE N +L A E + + + + +E Q N
Sbjct: 618 DSASKIDSLTEKLKVAN---AEKNAALCEAALEKVPLAKHNKLSDGTFSTPDKENVQSTN 674
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 566 DLAEANRSLILF----ANEMIVARRDAETARQDCENARRETAQLAN 441
DL +ANR L ANE + +RD R+D + +R+ QL N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 767 LITKSGVIQLIMKSKLPYAIELQEWLL 687
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -3
Query: 344 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 186
++ R + RS+GR ++ + + +PN+ N L+ V+ IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/75 (18%), Positives = 36/75 (48%)
Frame = -3
Query: 623 NDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLA 444
ND++ D+L + ++ E ++ +N +R+ + ++ N+R+ ++
Sbjct: 19 NDLVRSSDELLNHRAIQESEQIETAADALITSNIGHRSRQRKKKTKK-ATNSRKPLSKFQ 77
Query: 443 NRMADIAQDVIAKPS 399
+ ++ +D I KPS
Sbjct: 78 SNTEEVNEDPILKPS 92
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 5.6
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +1
Query: 538 MSDRLASAKSALATVNFCVRSSILAI-----TSFVSISTAGAYLPVHST*GMT 681
+ DRL SA+S T C+ ++ LA T +VS T G + V S G+T
Sbjct: 128 IKDRLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLT 180
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 337 CARKNDRWAAA*NDW 293
C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 7.4
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Frame = +1
Query: 343 ANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAV--------SRRAFSQSCRAVS 498
++SL +S T+ S + ++ S + ++ LAS + + A S S + +
Sbjct: 126 SSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTA 185
Query: 499 ASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYLPVHST*GM 678
AS AT SLA S L S SA AT + SS A S S S A + L +ST
Sbjct: 186 ASNSATSSSLA---SSSLNSTTSATATSSSL--SSTAASNSATSSSLASSSL--NSTTSA 238
Query: 679 TSSKS 693
T++ S
Sbjct: 239 TATSS 243
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 650 YAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCEN 471
YAP+V + I L + + A LA SL+LF + V +D ET + +
Sbjct: 146 YAPSVAKANEGLAKAIAGLAKYVAKAIQGLAHIILSLLLFILGLEVIEQDEETGDVEMSS 205
Query: 470 AR 465
R
Sbjct: 206 MR 207
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 9.8
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Frame = -3
Query: 335 RPQKRSLGRSLKRLGSNDVIFSSDYVPNS-----MNVLNKVKEAIPRNKFKAKHNR---- 183
+P ++L + ++ + S++ +P S +N + ++E +P K K N
Sbjct: 166 KPFVQALKLTFEKTLGQPAVTSTEKIPVSETTRNVNSQHLMRERVPGEKILPKSNERNIL 225
Query: 182 ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSLRN 84
IT Y L N++GST++ AR + RN
Sbjct: 226 ITSALPYVNNVPHLGNIVGSTLSADVFARYHRARN 260
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 536 LFANEMIVARRDAETARQDCE 474
+FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,955
Number of Sequences: 5004
Number of extensions: 66186
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -