Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10f24
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 35 0.089
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 31 1.1
11_01_0464 + 3597568-3600244,3600345-3600742 31 1.5
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 31 1.5
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 29 3.4
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 3.4
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 29 3.4
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 4.4
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 4.4
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 4.4
01_01_1119 + 8882481-8882687,8882793-8882933,8883024-8883143,888... 29 4.4
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466... 29 5.9
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697... 29 5.9
02_05_0612 + 30348495-30348995,30349679-30350023 28 7.8
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 34.7 bits (76), Expect = 0.089
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = -3
Query: 608 KIDDLTQKLTVANADLA--EA-NRSLILFANEMIVARRDAETARQDCENARRET-AQLAN 441
+ID+L KLT +AD+A EA N L+ A E A ++ T +D E+A RE+ A+ A
Sbjct: 244 EIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRESAAREAA 303
Query: 440 RMAD 429
R+A+
Sbjct: 304 RVAE 307
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/104 (22%), Positives = 47/104 (45%)
Frame = -3
Query: 710 IELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILF 531
++L++ L+E V + CT K ++E+DT K+ D+ + ++ I
Sbjct: 688 LKLKDLLIEAVALKWSCTQKNMASIELDT------------KIWEMEKDVKKLEKNAIEA 735
Query: 530 ANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPS 399
A E +R + +Q NA++ +A D+A+ + P+
Sbjct: 736 AKEYENCKRKTQEHKQQLSNAKQHAESIAMITEDLAKKFLEMPT 779
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 404 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 228
PS H+L V ++ N F+ + P +SL++L D F+ +P+S+ N+ N V
Sbjct: 384 PSGLTNLHNLVVIELSGNRFSGVLPDWLGALKSLQKLTVGDNNFTG-LIPSSLFNLTNLV 442
Query: 227 KEAIPRNKFKAK 192
+ NKF +
Sbjct: 443 HLFLYSNKFSGQ 454
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3
Query: 578 VANADLAEANRSLILFANEMIVARRDAETARQDCENA---RRETAQLANRMADIAQDVIA 408
+A+ L EAN +N + + D + C NA E L ++A+ Q +IA
Sbjct: 1817 IASGLLEEANLFAPSLSNAYLPSEHDENHIEEKCSNATLLEDEDTYLRQKLANNVQKIIA 1876
Query: 407 KPSNPQLC 384
K S LC
Sbjct: 1877 KGSANNLC 1884
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -3
Query: 449 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFS 270
L ++M++++ + N C+S+ V D+ NN + RP + S + + D +
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339
Query: 269 SD 264
D
Sbjct: 340 DD 341
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 537 FVCQRNDCGSTRR*NGSARLRKRAP 463
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 665 LCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETAR 486
L + + A + N++ D T++L A ++ + +L A E ARR E
Sbjct: 132 LLSDELATQFDRCKNEMARMFQDHTERLRRALGEVRRRHYRSLLGAAEAAAARRMRE-KE 190
Query: 485 QDCENARRETAQLANRMADIAQDVIA 408
+ NA R A+L R+A + + A
Sbjct: 191 AEASNAARRGAELEERVARLRAEAAA 216
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 747 HARFGNEHCVWVQIQRVALLCHA 815
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 523 SLANKMSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYL 654
+L +SD LAS S+LA V +++ A+ S S S++ +Y+
Sbjct: 44 TLRASLSDLLASIPSSLALVGPAAAAAVAAVASSFSSSSSSSYV 87
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -3
Query: 602 DDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADI 426
DDLT+K+ VAN + + +L F RQ E RRE + R+ ++
Sbjct: 1038 DDLTKKVEVANENFKQLKDTLKSFEESTKGLETSLMMERQQNEANRREVGEAQQRVEEL 1096
>01_01_1119 +
8882481-8882687,8882793-8882933,8883024-8883143,
8883789-8883884,8884076-8884189
Length = 225
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +1
Query: 397 LLGLAITSCAM--SAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSA 570
++G ++ A +A LA A +R++ RAVSA+ A +SLA + S
Sbjct: 1 MVGWVVSGVAFWWTAFLLARGAFPKRSYDFCNRAVSAAHAAAAVSLACLSVADWSRPLSP 60
Query: 571 LATVNFCVRSSILAIT-SFVSISTAGAYL 654
LA + + LA+T S++ A YL
Sbjct: 61 LAAASSPPQMKALAVTLSYMVYDAACCYL 89
>09_04_0162 +
15245354-15245458,15245558-15245629,15245793-15246617,
15247787-15248474,15248805-15248821
Length = 568
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = -3
Query: 728 SKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEAN 549
+KLP ++ W L++ ++ PA +++N ++ + + L+QK+ D ++
Sbjct: 410 TKLPEKYFIERWRLKDKNHELFVPNTLMPAAVLESNPLL-RFNILSQKMIKLALDASKTK 468
Query: 548 RSLILFANE 522
+ + NE
Sbjct: 469 ENFVYVMNE 477
>07_03_0006 +
12268852-12269146,12269362-12269487,12269536-12269753,
12269918-12270292,12270376-12270610,12270698-12270861
Length = 470
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = -3
Query: 371 VCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPR------ 210
V D GNN F + P K L R ++ N + +V N++K AIP+
Sbjct: 285 VYDNGNNTFRTIFPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKL 344
Query: 209 -NKFKAKHNRITLLEDYTREELMNVI 135
++ A H ++ +L+ E ++VI
Sbjct: 345 TKRYDAAHLQVLVLDHSLIPESVDVI 370
>02_05_0612 + 30348495-30348995,30349679-30350023
Length = 281
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 328 CGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 471
C R NA R W + +L +A+ + M A LA C+V R+
Sbjct: 231 CFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,219,490
Number of Sequences: 37544
Number of extensions: 502847
Number of successful extensions: 1658
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -