Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10f23
(417 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022967-2|AAB69880.1| 305|Caenorhabditis elegans Hypothetical ... 31 0.25
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 29 1.0
Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 28 2.4
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 28 2.4
Z81076-12|CAB03061.2| 161|Caenorhabditis elegans Hypothetical p... 27 4.1
AF047657-2|AAK18950.2| 358|Caenorhabditis elegans Serpentine re... 27 4.1
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 27 5.5
U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical pr... 27 5.5
AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 27 5.5
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr... 27 7.2
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 7.2
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 7.2
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 7.2
AC006629-9|ABC48255.1| 319|Caenorhabditis elegans Hypothetical ... 27 7.2
Z98866-22|CAE18019.1| 162|Caenorhabditis elegans Hypothetical p... 26 9.5
Z82059-9|CAB04875.1| 292|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF129111-1|AAD37121.1| 292|Caenorhabditis elegans cell division... 26 9.5
AF024494-12|AAB70332.3| 332|Caenorhabditis elegans Serpentine r... 26 9.5
AF016418-8|AAK18897.1| 330|Caenorhabditis elegans Serpentine re... 26 9.5
>AF022967-2|AAB69880.1| 305|Caenorhabditis elegans Hypothetical
protein C13A2.9 protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.25
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 321 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 202
GL+ S IFN L A++LL+ N +K K I+N +
Sbjct: 12 GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 29.5 bits (63), Expect = 1.0
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = -1
Query: 348 CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNY-SVIEG 175
C + INL +N +F IF I+H +NVLLV +IY + + Y +V+
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316
Query: 174 AMCC-NGDCLAVVVLDRNQLQNT 109
+ C N D L V R + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339
>Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical
protein Y57G11B.7 protein.
Length = 215
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 78 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 179
CILNF LP A T PN+ HC+ +L
Sbjct: 3 CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -1
Query: 261 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 94
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 93 -ESLEYTSDNVELLCKKVCVIV 31
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -1
Query: 261 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 94
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 93 -ESLEYTSDNVELLCKKVCVIV 31
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z81076-12|CAB03061.2| 161|Caenorhabditis elegans Hypothetical
protein F35C5.11 protein.
Length = 161
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 382 IECEECGVTHKMPGCAKNKPGSI*LGVGRVY 290
I+C +CG K+P AKN + + V +Y
Sbjct: 21 IKCHQCGGAEKIPKFAKNALAKLNISVDSLY 51
>AF047657-2|AAK18950.2| 358|Caenorhabditis elegans Serpentine
receptor, class h protein270 protein.
Length = 358
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 348 ILCVTPHSSHSIKTIMLN--FWQIL 416
ILC TP S S+K M N FW +L
Sbjct: 39 ILCKTPDSMKSVKWSMFNLHFWSVL 63
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 175 TFNYTVIFQICIINVFHVPLF 237
TF + ++ Q+ I+N FH+ LF
Sbjct: 1176 TFGHLLVTQLIIVNTFHLALF 1196
>U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical
protein D1009.1a protein.
Length = 655
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 205 CIINVFHVPLFERVRNKQYISRQMH 279
CI N+ +P+F+ R K IS ++H
Sbjct: 183 CITNINLLPMFKAAREKNLISDEIH 207
>AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical
protein Y54E10A.16a protein.
Length = 427
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 178 FNYTVIFQICIINVFHVPLF-ERVRNKQYISRQMHNVKN 291
FN+ + IC + P F ER RNKQYI +M+ V N
Sbjct: 359 FNHYKVKSICDV----WPDFNERERNKQYIKTEMNQVPN 393
>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
R09A8.1 protein.
Length = 1095
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 117 QNTDMEVLESLEYTSDNVELLCKKVCVIVD 28
+N M + L+ + ++ L C KVCVI D
Sbjct: 1003 ENASMSGRQPLDTSRKHMFLFCNKVCVITD 1032
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 81 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 179
+ + TLP P A + TPQ+P H + +HL
Sbjct: 66 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 98
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 81 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 179
+ + TLP P A + TPQ+P H + +HL
Sbjct: 83 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 115
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 81 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 179
+ + TLP P A + TPQ+P H + +HL
Sbjct: 195 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 227
>AC006629-9|ABC48255.1| 319|Caenorhabditis elegans Hypothetical
protein F12E12.10 protein.
Length = 319
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 11 VYLL*LSTITHTFLHNNSTLSLVYSKLSNTSMSVFCS*FRSNT 139
+YL + + L+N S + + S LSNT +++F +R+ +
Sbjct: 200 IYLRSSNDLNELLLNNGSDIQVQRSMLSNTDINIFLKNWRNGS 242
>Z98866-22|CAE18019.1| 162|Caenorhabditis elegans Hypothetical
protein Y49E10.27 protein.
Length = 162
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -3
Query: 409 CQKFNMIVLIECEECG--VTHKMPGC 338
C +FNM+V CG T K+PGC
Sbjct: 91 CHRFNMVVFEHSVFCGDSRTCKIPGC 116
>Z82059-9|CAB04875.1| 292|Caenorhabditis elegans Hypothetical
protein T27E9.3 protein.
Length = 292
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 334 LRNQAFCASHHTLHTQLR 387
LR +FC +HH LH L+
Sbjct: 111 LRGLSFCHAHHVLHRDLK 128
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = -1
Query: 150 LAVVVLDRNQL---QNTDMEVLESLEYTSD 70
LAV +LDRN++ +N + E+LE L+ S+
Sbjct: 216 LAVAILDRNKMAENENLENEILEILDNDSE 245
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical protein
K02C4.3 protein.
Length = 1307
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 61 FNVVTSVF*TFQHFHVRVLQLISVQHHNGQTIAIATHRTFNYTVIFQICIIN 216
F+ +T + QH + LQLI ++ H + V+ +CII+
Sbjct: 1144 FSTITMIKLIMQHMASKTLQLIDMEFHLSKNERRVRFEDIIREVVSSVCIIH 1195
>AF129111-1|AAD37121.1| 292|Caenorhabditis elegans cell division
protein kinase 5 protein.
Length = 292
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 334 LRNQAFCASHHTLHTQLR 387
LR +FC +HH LH L+
Sbjct: 111 LRGLSFCHAHHVLHRDLK 128
>AF024494-12|AAB70332.3| 332|Caenorhabditis elegans Serpentine
receptor, class u protein28 protein.
Length = 332
Score = 26.2 bits (55), Expect = 9.5
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Frame = +2
Query: 47 FLHNNSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQSPLQHIAP-SITL*FFKYVL*MYF 223
FL N+ L S ++N+ + V + +S T +S H A S+T+ + Y
Sbjct: 210 FLLFNNLFWLSASLINNSVLLVKLAHLKSTTAAHTRSQKSHKAEVSLTVTTVSMIC-SYL 268
Query: 224 TSRFLSALGTSNTL--AVRCIMLKINSADAELYRPRFIFCATRHFVRHTTLFTLN*DDHV 397
++ + N++ + IML+ D E ++F T R ++ T+ HV
Sbjct: 269 SNSMIVIAAQLNSIEYSYYAIMLRPFGNDLETCMVSWVFYLTHPVFRRKSMVTVQVSQHV 328
Query: 398 EL 403
+L
Sbjct: 329 KL 330
>AF016418-8|AAK18897.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein169 protein.
Length = 330
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 135 TPQRPNNRHCNTSHLQLHCNFSNMYYKCISRP 230
TP + N L L C FS+ Y+ C++ P
Sbjct: 41 TPSKMQNVRNTMFLLHLVCAFSDFYFSCLAIP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,647,402
Number of Sequences: 27780
Number of extensions: 231779
Number of successful extensions: 656
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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