Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f19
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    48   6e-07
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    44   7e-06
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    41   9e-05
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    35   0.004
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    33   0.018
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   1.6  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.7  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   3.6  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   3.6  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   6.3  
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    24   8.4  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    24   8.4  
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa...    24   8.4  
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos...    24   8.4  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    24   8.4  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    24   8.4  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    24   8.4  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   8.4  

>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 48.0 bits (109), Expect = 6e-07
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = -1

Query: 245 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNE-FAFDNLFIHG 69
           L ++N+ QG+ + V+L+N     G +E  D +MN++ +  I   P G++ F     +I G
Sbjct: 4   LTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRG 63

Query: 68  RNIRYVHIPENM 33
            NI+Y+ I + +
Sbjct: 64  NNIKYLRIQDEV 75


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 44.4 bits (100), Expect = 7e-06
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = -1

Query: 212 VTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIRYVHI 45
           VTV+L+ND  + G+++ VD F+N+  +N    D     +  A  +LFI G  +RYVH+
Sbjct: 15  VTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHM 72


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 40.7 bits (91), Expect = 9e-05
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -1

Query: 227 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNE-FAFDNLFIHGRNIRYV 51
           L  + V+++L+N T V G I  VD  MN   K A+    +G E    + L I G NIRY 
Sbjct: 10  LTNETVSIELKNGTIVHGTITSVDMQMNTHLK-AVKMTVKGREPVPVETLSIRGNNIRYY 68

Query: 50  HIPENMSL 27
            +P+++ L
Sbjct: 69  ILPDSLPL 76


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 245 LCV--VNSLQGKNVTVDLRN-DTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFI 75
           LC+  ++  QG  VT++L N  TY   LIE  D  MN   ++       G     D ++I
Sbjct: 3   LCIKLLHETQGHIVTMELENGSTYRGKLIEAEDN-MNCQMRDISVTARDGRVSHLDQVYI 61

Query: 74  HGRNIRYVHIPE 39
            G +IR++ +P+
Sbjct: 62  RGSHIRFLIVPD 73


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 33.1 bits (72), Expect = 0.018
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 236 VNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIR 57
           +N + GK V + L +     G++  +DG+MN++ +             + + FI G N+ 
Sbjct: 9   LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVL 68

Query: 56  YV 51
           YV
Sbjct: 69  YV 70


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 165 FNQSTDICVIS*IHSHIFSLQRINNT*KCIMIKELFLRCTYEERCVRHVFCFGLPTSSR 341
           + +S  + V+S   S  F+L+R+    + +  K +     +EE   + ++ FG P SSR
Sbjct: 341 YKESQRMKVLSGSASQPFTLKRLQKDFQLLKAKLICALREWEEDNEKKIYVFGKPLSSR 399


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 328 LLLVGNECNDYLQTIIHISHFKLIYFIY 411
           LL++G++ ND+  +IIH S +  ++ ++
Sbjct: 70  LLMLGDQVNDFTFSIIHTSIWYNVFVVF 97


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 260 YHNTLLCVVNSLQGKNVTVDLRNDTYVC 177
           YH+ +L V+N+    N+  +L N   +C
Sbjct: 429 YHDLILYVINTYYSGNIMKNLGNKDLIC 456


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 155 HLLIQSIHRHMCHFLN--PQSHFFLAKN*QHIK 247
           HLL+QS     C F N  PQ +F   +   H+K
Sbjct: 256 HLLLQSSENQACKFFNIGPQVYFDPRERLLHVK 288


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 343 YLLEVGNPKQKTCLTQRSS*VHLKKSSFI-IIH--FYVLLILCKEKM*LW 203
           +L  +GN    T +   SS  HL+K S+  ++H   Y L+I   +K  +W
Sbjct: 30  FLNAIGNENTITPVYADSSLTHLRKKSYTKVVHDCTYALVINPYDKKVIW 79


>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 36  IFWNMHISDITTMNKQVVKSEFISLWITINRIF 134
           I W++ I  +  ++K+    +F+S+WI  NR +
Sbjct: 111 IIWSIII--VFAVDKKFEVQKFLSIWINENRFY 141


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 36  IFWNMHISDITTMNKQVVKSEFISLWITINRIF 134
           I W++ I  +  ++K+    +F+S+WI  NR +
Sbjct: 111 IIWSIII--VFAVDKKFEVQKFLSIWINENRFY 141


>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
           family 9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 36  IFWNMHISDITTMNKQVVKSEFISLWITINRIF 134
           I W++ I  +  ++K+    +F+S+WI  NR +
Sbjct: 111 IIWSIII--VFAVDKKFEVQKFLSIWINENRFY 141


>SPBC1348.01 |||S. pombe specific DUF999 protein family
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 36  IFWNMHISDITTMNKQVVKSEFISLWITINRIF 134
           I W++ I  +  ++K+    +F+S+WI  NR +
Sbjct: 111 IIWSIII--VFAVDKKFEVQKFLSIWINENRFY 141


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -1

Query: 314 KNMSDAALFIGTPQEKFFYHNTLLCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNI 141
           K + +  +++  P++ F   +T  C+V S       V LR       L   +DGF  I
Sbjct: 216 KKIGNIRMYLVNPRDIFALGSTCNCIVVSSSNFQSYVQLRKPLLENNLPYEIDGFDKI 273


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 36  IFWNMHISDITTMNKQVVKSEFISLWITINRIF 134
           I W++ I  +  ++K+    +F+S+WI  NR +
Sbjct: 111 IIWSIII--VFAVDKKFEVQKFLSIWINENRFY 141


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 119 CDPQGNEFAFDNLFIHGRNIRYVHIPENMSL 27
           C P  +      +  H  ++R +H+P++M+L
Sbjct: 299 CHPDISVMIVSPICAHSLSLRPIHVPDSMAL 329


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 388 NDLYV**SVSNRYIRYLLEVGNPKQK 311
           NDL++  S+SN Y  Y+ + G P  K
Sbjct: 79  NDLFLTYSLSNAYREYIFDGGLPFSK 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,049
Number of Sequences: 5004
Number of extensions: 35054
Number of successful extensions: 112
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)