Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f19
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z81097-16|CAE17865.1|  122|Caenorhabditis elegans Hypothetical p...    46   1e-05
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    40   5e-04
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    40   7e-04
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    33   0.11 
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    32   0.14 
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    29   1.8  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   2.4  
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    28   2.4  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   2.4  
AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z81035-2|CAB02736.1|  379|Caenorhabditis elegans Hypothetical pr...    27   7.2  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    27   7.2  

>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = -1

Query: 230 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 57
           SL GK+V V+L+ND  +CG +  VD ++N+   +    DP+   +  +  N FI G  +R
Sbjct: 9   SLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNCFIRGSVVR 68

Query: 56  YVHIPEN 36
           YV +P +
Sbjct: 69  YVQLPSD 75


>Z81097-16|CAE17865.1|  122|Caenorhabditis elegans Hypothetical
           protein K07A1.15 protein.
          Length = 122

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -1

Query: 239 VVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCDPQGNEFAFDNLFIHGRN 63
           V+  + GK V V+LRND YV G++E  D  ++I  + A I  D Q  E       + G++
Sbjct: 17  VLQGMAGKKVFVELRNDVYVIGILESCDSNLDIRIQYATIIRDAQKTE--EPEYLVIGKH 74

Query: 62  IRYVHIPENMSLLSTIR 12
           +R+VH    +  ++ IR
Sbjct: 75  VRFVHFEHQVVPIAAIR 91


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 227 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 48
           L  + V ++L+N T V G I  VD  MN   +              D L I G NIRY+ 
Sbjct: 10  LSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYII 69

Query: 47  IPENMSL 27
           +P+ ++L
Sbjct: 70  LPDPLAL 76


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -1

Query: 245 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNE-FAFDNLFIHG 69
           L ++ + Q   + V+L+N     G ++  D +MNI   + I+    G++ F     ++ G
Sbjct: 5   LSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRG 64

Query: 68  RNIRYVHIPENM 33
             I+Y+ IPE +
Sbjct: 65  STIKYLRIPETV 76


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 221 GKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYV 51
           GK V V L +     G++  +DG+MNI+ +          +  + + FI G N+ Y+
Sbjct: 16  GKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIRGNNVLYI 72


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = -1

Query: 239 VVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNI 60
           +++  +G  VT++        G +   +  MN      +     G     DN+FI G  I
Sbjct: 10  ILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69

Query: 59  RYVHIPE 39
           R++ +P+
Sbjct: 70  RFMILPD 76


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 212 VTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVHIPE 39
           VT++        G +   +  MN      +     G     DN+FI G  IR++ +P+
Sbjct: 5   VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPD 62


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 170  IELVDGFMNISFKNAIYCDPQGNEFAFDNL 81
            ++L D  ++ S    +  DP G+E AFDN+
Sbjct: 1037 LDLNDRTISFSLNGELLLDPSGSEMAFDNV 1066


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 236 VNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCD--PQGNEFAFDNLFIHGR 66
           +NSL GK V   L+      G++  VD +MN+   +A  Y D   QGN      + I   
Sbjct: 13  LNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN---LGEILIRCN 69

Query: 65  NIRYV 51
           N+ YV
Sbjct: 70  NVLYV 74


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 170  IELVDGFMNISFKNAIYCDPQGNEFAFDNL 81
            ++L D  ++ S    +  DP G+E AFDN+
Sbjct: 1158 LDLNDRTISFSLNGELLLDPSGSEMAFDNV 1187


>AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.1 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +1

Query: 130 FLNEMFIKPSTNSINPQTYVSFLKSTVTFFPCKELTTHKSVL**KNFS*GVPMKSAASDM 309
           FL+E+ +      +N Q  +S ++S+ +   CK    H++ +   N    VP+       
Sbjct: 202 FLSELIVFTVLIRLNMQKAISEIRSSAS---CKTFKIHRNFMKSLNMQIAVPIVVICIPS 258

Query: 310 FFALDYLLLVGN 345
           FF L    L GN
Sbjct: 259 FFGLAVPFLQGN 270


>Z81035-2|CAB02736.1|  379|Caenorhabditis elegans Hypothetical
           protein C15H11.2 protein.
          Length = 379

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 236 VNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYC 117
           V  L G  VT++ R   Y+C  +  VD F+     N + C
Sbjct: 86  VPGLIGWLVTLEWRGGAYLCKFMRFVDAFVFAISSNIMVC 125


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 8 protein.
          Length = 2329

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 86  NLFIHGRNIRYVHIPENMSL 27
           NL IH +N+ Y+H+  N +L
Sbjct: 497 NLLIHRKNLNYLHLDYNFNL 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,561,265
Number of Sequences: 27780
Number of extensions: 196326
Number of successful extensions: 378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)