Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f15
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    31   1.2  
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881     31   1.6  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   4.9  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   8.5  
03_05_0092 - 20714102-20717902                                         28   8.5  

>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
            29254991-29255130,29255262-29255571,29255810-29255952,
            29256106-29256306,29256453-29256581,29256921-29257199,
            29258036-29259720,29261255-29261764,29261901-29262108,
            29264347-29264458,29264594-29264763
          Length = 1439

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 299  DKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLP 147
            DKL   + S+L +    N+   L+++YD+     F+T    K K  A +LP
Sbjct: 1141 DKLRQWYLSMLQKAIKENIVVELTNLYDQF----FVTAKECKIKVSAARLP 1187


>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
          Length = 463

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 858 YHQEYQRVVSKVYKKSXHGKHAGATIF-YRNCGR 760
           YHQ Y R++SKV   +    H G  ++ +R CG+
Sbjct: 272 YHQRYYRLMSKVSPPTSGSWHKGCVMYAHRGCGQ 305


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 596 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 462
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 548 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 438
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 489 FHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFF 668
           F  +       PL +  L++ T   N+  ++N L L   H +    D+H+++ I  ++FF
Sbjct: 571 FFMVTESSGDVPLEVRHLTIMT--NNLSKLINDLSLKISHSSG--SDQHFLQRIRTIIFF 626

Query: 669 QEIYNSN 689
            +  NS+
Sbjct: 627 ADFSNSD 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,841,207
Number of Sequences: 37544
Number of extensions: 471213
Number of successful extensions: 1165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)