Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f15
         (875 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024254-1|ABC86316.1|  199|Drosophila melanogaster IP15861p pro...    36   0.097
BT025830-1|ABF85730.1|  258|Drosophila melanogaster IP09124p pro...    34   0.30 
AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-P...    32   0.90 
AE013599-545|AAF59166.2|  922|Drosophila melanogaster CG14766-PA...    32   1.2  
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P...    31   2.1  
DQ902587-1|ABI94369.1| 2009|Drosophila melanogaster calmodulin-b...    31   2.8  
AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-P...    30   3.6  

>BT024254-1|ABC86316.1|  199|Drosophila melanogaster IP15861p
           protein.
          Length = 199

 Score = 35.5 bits (78), Expect = 0.097
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -1

Query: 821 TKNQXMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYIL 642
           T N       +QQ   +     +NE L N +++ + N+  M      ++++ K N+N ++
Sbjct: 125 TSNYLQQQQQQQQKQQQEQLQQQNETLSNNIKNFNNNEKIMQ-----LSYITKSNVNSVI 179

Query: 641 NVMPVM--QDERKMSKRKKK 588
              P M  +D++K++K+KKK
Sbjct: 180 K-FPAMSVKDKKKLNKKKKK 198


>BT025830-1|ABF85730.1|  258|Drosophila melanogaster IP09124p
           protein.
          Length = 258

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = -1

Query: 857 IIKNTSGSFQRFTKNQXMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIV 678
           I+ N+S S     + Q      +QQ   +     +NE L N +++ + N+  M      +
Sbjct: 177 IMSNSSTSSAASLQQQQQQQQKQQQEQLQQ----QNETLSNNIKNFNNNEKIMQ-----L 227

Query: 677 NFLEKKNINYILNVMPVM--QDERKMSKRKKK 588
           +++ K N+N ++   P M  +D++K+ K+KKK
Sbjct: 228 SYITKSNVNSVIK-FPAMSVKDKKKLKKKKKK 258


>AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-PA,
            isoform A protein.
          Length = 1853

 Score = 32.3 bits (70), Expect = 0.90
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -1

Query: 230  SSIYDEVLTRDFITKNMAKFKTVALKLPV-APSTTEYVPTSISGSKKRKNSVPAKQRSSI 54
            +SI D   T+D  T   +      LK    AP+TT+ +PT+ +     K        SS 
Sbjct: 1553 TSISDSTTTKDITTTAASPTTAEDLKTTTPAPTTTDNIPTTTNAPTTTKEITTTTSASS- 1611

Query: 53   KNRRNTTAAPT 21
             +   TT APT
Sbjct: 1612 TDETTTTTAPT 1622


>AE013599-545|AAF59166.2|  922|Drosophila melanogaster CG14766-PA
            protein.
          Length = 922

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 377  PASKKRQTAVLTNANLA--ELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 204
            P S+KR+   +T  N +  E K        LYS +  +++ET  N  +PL    Y   L 
Sbjct: 827  PVSEKRELISITKPNQSDCEAKHRSHKDVNLYSRYPKIISETLENLTSPLRFENYTRELL 886

Query: 203  RDFITKNMAK 174
            + +   ++ K
Sbjct: 887  KAYKALDVTK 896


>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
           protein.
          Length = 1161

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 164 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 21
           +A K PVA STT  VPT+++ SK    S  +   ++      T  +P+
Sbjct: 340 LAKKYPVATSTTTKVPTTLATSKTTSRSSSSSTTTTTMATSTTATSPS 387


>DQ902587-1|ABI94369.1| 2009|Drosophila melanogaster
            calmodulin-binding transcriptionactivator protein.
          Length = 2009

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 845  TSGSFQRFTKNQXMV--NMPEQQSSTETAAVCKNEKLLNKLESSSYNKSN 702
            TSG+    +  Q ++  N  +Q ++T TAA C N K  N L   S+  +N
Sbjct: 1004 TSGTSSTSSSLQSIIDGNQQQQITTTSTAATCDNLKSANALSEDSHTVNN 1053


>AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-PA
           protein.
          Length = 1959

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 143 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLM 12
           AP  T Y PT  S  +  ++S+  + R S KN+  T A  +L M
Sbjct: 227 APVATLYPPTQQSLMELEEDSIVREMRESTKNQTKTPAQKSLFM 270


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,487,779
Number of Sequences: 53049
Number of extensions: 818761
Number of successful extensions: 2569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2557
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)