Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f12
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   4.1  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   5.4  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   5.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   7.2  
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ...    25   9.5  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.5  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 448 YFLLNIICN*NFVFILLKSWI 510
           +FL NII   N++++L K+WI
Sbjct: 30  FFLKNIIVLSNYLYLLYKAWI 50


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 351 IEEYFLINNFSIADYEFEDMFEIV 422
           +E+YF +N   I+D E ED+ +I+
Sbjct: 347 LEKYFEVNALDISDSESEDLSDIL 370


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 678 DDECRYAQMAKVVRSQLQKHKLDARIDHNDE 586
           D + RY +  + V + +QK ++ + +DHN++
Sbjct: 354 DMDARYQRHMQTVVNSMQKMRVTSPVDHNEQ 384


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 51   GEAKYYKYLMSQ-MDFENQVADEIRRF-----CETRLKPAISCNTLTAE 179
            GE   Y +   + M+F NQV +EI R+     C    K  I+C +L A+
Sbjct: 885  GETVQYAFSDPEHMEFVNQVINEIDRYMRIDACMPSFKNIITCKSLKAK 933


>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
           Taf13|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 309 FKLFLLHNYDNCENIEEYFLINNFSIADYEFEDMFEIVRI 428
           FK  L  +      +EE    +NFS+A + F+ +   +RI
Sbjct: 73  FKFALRDDPKKLGRVEELLRSSNFSVAGHPFQGVLSRIRI 112


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 671 NADTLKWLKWSEANYKNINLM 609
           N  T+K   W  A Y NI LM
Sbjct: 353 NCGTIKTANWRNATYMNITLM 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,928
Number of Sequences: 5004
Number of extensions: 62244
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)