Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f12
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0300 + 21784634-21784691,21784784-21784893,21787486-217877...    29   3.2  
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    29   4.3  

>02_04_0300 +
           21784634-21784691,21784784-21784893,21787486-21787771,
           21788292-21788472,21788978-21789195,21789511-21789631,
           21789703-21789800,21789894-21790105,21790199-21790311,
           21790404-21790499,21790626-21790841,21790958-21791099,
           21791280-21791525,21792078-21792389
          Length = 802

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +3

Query: 144 KPAISCNTLTAENLNT----LVDSVVCKNGLLNPYAKEVQFALQYFF 272
           K +IS N L  +++ +    L+  ++C NG   P  +E++FAL+Y F
Sbjct: 391 KHSISENDLILDSIGSWSGSLLKEMLCSNGKGTPGREEIEFALKYPF 437


>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 27  YLHLNGLHGEAKYYKYLMSQMDFENQVADEIRRFCETRLKPAISCNTLTAENLNTLVDSV 206
           + H NG   + +  + L      E   AD +R   E R +   SC      + +T  D  
Sbjct: 237 FRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSCEITNKPSGSTSTDKA 296

Query: 207 VCKNGLLNP 233
           V  +GL NP
Sbjct: 297 VDASGLYNP 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,151,283
Number of Sequences: 37544
Number of extensions: 333953
Number of successful extensions: 715
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)