Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f10
         (860 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    29   0.24 
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    29   0.24 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   3.0  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    23   9.0  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    23   9.0  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    23   9.0  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   9.0  

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 669 EEKYECKVCLERQRDAVLMPCRH-FCV-CVQCYFGLDQKCPTC 547
           E  ++C VC E   D ++  C+H FC  C    +    +C  C
Sbjct: 242 ELPFKCYVCRESFVDPIVTKCKHYFCERCALAQYKKSSRCAIC 284


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 669 EEKYECKVCLERQRDAVLMPCRH-FCV-CVQCYFGLDQKCPTC 547
           E  ++C VC E   D ++  C+H FC  C    +    +C  C
Sbjct: 242 ELPFKCYVCRESFVDPIVTKCKHYFCERCALAQYKKSSRCAIC 284


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 414 KQRRLERQHAQTAARFKQACLQTGVAVQ 331
           K+ RLE+Q A   A  KQ C +  V  Q
Sbjct: 207 KEARLEKQEADRYASLKQECSEKQVHFQ 234


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 325 DTIGPMAQSLFLMC--TTDLFARTAQQSNGPTA 233
           ++ G ++ SL L+   + DLF R   QS  PTA
Sbjct: 359 ESAGAVSVSLHLLSALSRDLFQRAILQSGSPTA 391


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 325 DTIGPMAQSLFLMC--TTDLFARTAQQSNGPTA 233
           ++ G ++ SL L+   + DLF R   QS  PTA
Sbjct: 359 ESAGAVSVSLHLLSALSRDLFQRAILQSGSPTA 391


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 325 DTIGPMAQSLFLMC--TTDLFARTAQQSNGPTA 233
           ++ G ++ SL L+   + DLF R   QS  PTA
Sbjct: 245 ESAGAVSVSLHLLSALSRDLFQRAILQSGSPTA 277


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = -3

Query: 660 YECKVCLERQRDAVLMPCRHFCVCVQC---YFGLDQKCPTC 547
           Y+CK C      A +       +C++C   YFG   +C  C
Sbjct: 771 YDCKRCPCPNNGACMQMAGDTVICLECPVGYFG--PRCELC 809


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,403
Number of Sequences: 2352
Number of extensions: 16655
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)