Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f09
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   207   4e-54
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical pr...    27   6.9  
X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein ( Caeno...    27   6.9  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    27   6.9  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   6.9  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  207 bits (505), Expect = 4e-54
 Identities = 96/139 (69%), Positives = 113/139 (81%)
 Frame = -1

Query: 453 MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPF 274
           M++QTER+F KQPTV LN K  I +  S+K  RY ++VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPW 59

Query: 273 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 94
            GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  
Sbjct: 60  AGNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHP 119

Query: 93  GDIVTIGECRPLSKTVRFN 37
           GD+VTIGECRPLSKTVRFN
Sbjct: 120 GDLVTIGECRPLSKTVRFN 138


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 229 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 110
           S+NED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -1

Query: 468 SLSSKMADQTERSFQKQPTVFLNRKKG-IGVKRSRKPLRYHKDVGLGFKTPREAIEGTYI 292
           ++ SK+     R F+K+      +  G  G+K  R+  R    +    K  RE +     
Sbjct: 6   TVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDK 65

Query: 291 DKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 196
           D K  F GN  +R  +  GV+ + KM+   V+
Sbjct: 66  DPKRLFEGNALLRRLVKIGVLDETKMKLDYVL 97


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 31  QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 135
           +++E  CF Q   F D +N+T L + +  R M+ H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 218 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 123
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 218 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 123
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical
           protein R107.7 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 250 AADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 384
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein (
           Caenorhabditis elegansgst-1 mRNA for glutathione
           S-transferase P  subunit. ).
          Length = 208

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 250 AADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 384
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
           cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 218 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 123
           +C + +  AA T TT    I  +NG  +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 424  KTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSP 317
            K TY +++P +   C  EQ        C P  Q  P
Sbjct: 1847 KCTYDITKPMDPITCSCEQNAAAHNTDCSPICQKQP 1882


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 133 VRAFVALLQGRGDW*YCNDRRMQ 65
           +RAFV L++   DW Y   RRMQ
Sbjct: 250 LRAFVRLIRNNSDW-YARYRRMQ 271


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 424 KTTYSLSEPQERYW-CEAEQKTVEIP 350
           KT  S+  PQ R++ CE  QKTV++P
Sbjct: 109 KTHKSIVLPQPRFYTCERIQKTVKLP 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,891,278
Number of Sequences: 27780
Number of extensions: 223911
Number of successful extensions: 672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)