Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f05
         (204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    25   1.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   1.8  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    23   4.2  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    23   5.5  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    23   5.5  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    23   7.3  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 44  NASCLVLTTGKKPLIDFIFSLIEATXDG 127
           N S L +   K+ +ID IFS +E   DG
Sbjct: 77  NKSRLEILNSKQKVIDDIFSRVEKKLDG 104


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 150 LXNSXLLXPSHVASINEKIKSIXGFFPV 67
           L N  L+  +HVA +NEK  SI   + V
Sbjct: 481 LKNFSLVLCTHVAKVNEKTNSIFRTYEV 508


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 107 LMKK*NQLXAFFRLSTQGKMRSVTVKDVEQDKIVK 3
           L++K N+L  F+ L    K  +    D ++D IVK
Sbjct: 63  LIRKINELQEFYLLEDLAKPVTNAGADADEDTIVK 97


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 141 SXLLXPSHVASINEKIKSIXGFFPVVNTRQDAFRHS 34
           S  + P   +S+   + +I GF+P  NTR    + S
Sbjct: 23  SVKILPLSESSLPPLVTTISGFYPPENTRFQLLKKS 58


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 50  SCLVLTTGKKPLIDFIFSLIE 112
           S LV  +G +PL DF+ +LI+
Sbjct: 662 SQLVEASGNEPLPDFVVNLIQ 682


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 59  QGKMRSVTVKDVEQDKIVK 3
           QGK  SV V+++ QD++ K
Sbjct: 67  QGKSGSVKVQEIPQDQLPK 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,763
Number of Sequences: 5004
Number of extensions: 5159
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)