Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10f05
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658...    28   0.90 
05_01_0599 + 5368091-5368123,5368212-5368383,5369237-5369335,536...    26   4.8  

>02_04_0454 +
           23064081-23064139,23064297-23064366,23064553-23065815,
           23065946-23066515
          Length = 653

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 44  NASCLVLTTGKKPLIDFIFSLIEATXDGFSXFEXIKVLXKASIIS 178
           NAS   + T  + L++ I SLI A  D  S    +K+L  A+I+S
Sbjct: 258 NASVKQIATRHRLLLEKIVSLIPAERDAVSCSFLLKLLKAANILS 302


>05_01_0599 +
           5368091-5368123,5368212-5368383,5369237-5369335,
           5369636-5369748,5369824-5369916,5370081-5370244,
           5370328-5370564,5370739-5370883,5370982-5371160,
           5371997-5372142,5372239-5372366,5372441-5372614,
           5372706-5372735,5373219-5373380,5373460-5373705,
           5373733-5373870,5373974-5374174,5374304-5374448,
           5374575-5374681,5374830-5374970,5375274-5375539,
           5375621-5375745,5375843-5376109,5376250-5376263
          Length = 1174

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   VLTILSCSTSFTVTERILPCVDNRKKAXN 87
           ++ +L  S    V ERI+P  DNRK   N
Sbjct: 529 LVRMLRASAKKAVGERIVPATDNRKMYYN 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,916
Number of Sequences: 37544
Number of extensions: 28953
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)