Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e22
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    27   4.1  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   5.5  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   5.5  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.6  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 135 ICNLLILSNAKFAVKFAMDKSYEKLKLELNIIRKV 31
           +C+   +++ KF V F+    Y  LKL   +IRK+
Sbjct: 44  MCSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKL 78


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 198 LQVLNTKKGNLSISNRKYDHGKTTIKGGNYKSVSLQERIFQIGEFLEFNL 347
           ++V+   KGN +I+N  YD           + +   +R+ +IGE ++F++
Sbjct: 105 MEVVEATKGNPNIANVVYDEHYVYALTPGREDMKNVKRLAEIGEKVDFSM 154


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -1

Query: 144 NQIICNLLILSNAKFAVKFAMDKSYEKLKLELNIIRKV 31
           +++   L +L+N+K  +K      Y+K+K E+ I++ +
Sbjct: 55  SEVFEGLNVLNNSKCIIKVLKPVKYKKIKREIKILQNL 92


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 306 ERIFQIGEFLEFNLFTCTRNIS----TNVKVKTTKCSLPFSYIN 425
           +RIF+ G  + F     TR +     T+++   + C+L  +Y+N
Sbjct: 820 KRIFKDGRVIVFQQLDFTRTVGVLLGTSIRTNASDCTLEVAYLN 863


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 205 TCSLCFRKGVVSYSTPNT 152
           +C LC  KGV S STP++
Sbjct: 563 SCPLCRTKGVASASTPSS 580


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 655 ESNDSIFKRQIDRDSKIKNIK 717
           ESN S+ K+Q D DS  KNI+
Sbjct: 672 ESNKSLIKKQEDVDSLEKNIQ 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,041
Number of Sequences: 5004
Number of extensions: 68991
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)