Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e22
         (807 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2226|AAF49859.2|  222|Drosophila melanogaster CG14117-P...    31   2.5  
AE013599-534|AAF59173.2|  403|Drosophila melanogaster CG17853-PA...    29   9.9  

>AE014296-2226|AAF49859.2|  222|Drosophila melanogaster CG14117-PA
           protein.
          Length = 222

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 592 VLSLNFLLITKP*LCYYCPIGESNDSIFKRQIDRDSKIKNIKFNETL 732
           +L LN + + +  LC YCPI  SN+S  ++ + RD   + +  +E +
Sbjct: 125 MLKLNEMRVHQQRLCLYCPIAFSNESHLEKHL-RDHHAERLYTSELI 170


>AE013599-534|AAF59173.2|  403|Drosophila melanogaster CG17853-PA
           protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
 Frame = -1

Query: 255 GHIFGLICLNCL-----SWYLRLAAYVSGRVLLVILPLTHSCNQIICNLLILSNAKF-AV 94
           G I G+I +N +     S    +  YV   VLL   PL   CN I+ +   L++A F + 
Sbjct: 280 GSILGIIMINMVLFADQSTRFGIVIYVMA-VLLQTFPLCFYCNAIVDDCKELAHALFHSA 338

Query: 93  KFAMDKSYEKLKLELNIIRKVRIP 22
            +  DK Y++  ++   ++K++ P
Sbjct: 339 WWVQDKRYQRTVIQ--FLQKLQQP 360


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,880,428
Number of Sequences: 53049
Number of extensions: 656615
Number of successful extensions: 1218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)