Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e21
         (825 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K817 Cluster: 1-deoxy-D-xylulose 5-phosphate synthase...    38   0.23 
UniRef50_Q2MI42 Cluster: Putative membrane protein ycf1; n=21; M...    37   0.53 
UniRef50_Q64MS6 Cluster: Putative outer membrane protein probabl...    35   2.2  
UniRef50_Q7REU3 Cluster: Unnamed protein product-related; n=9; P...    35   2.2  
UniRef50_Q3LWC0 Cluster: Putative uncharacterized protein; n=2; ...    34   5.0  
UniRef50_Q9LM79 Cluster: F2D10.24; n=2; Arabidopsis thaliana|Rep...    33   6.6  
UniRef50_Q7RAF7 Cluster: Kinesin motor domain, putative; n=5; Pl...    33   8.7  

>UniRef50_A5K817 Cluster: 1-deoxy-D-xylulose 5-phosphate synthase,
           putative; n=3; Plasmodium|Rep: 1-deoxy-D-xylulose
           5-phosphate synthase, putative - Plasmodium vivax
          Length = 1111

 Score = 38.3 bits (85), Expect = 0.23
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -3

Query: 529 DVPQKNNALFFKKKEKSSILFDFGNINVS-FRDLNEEEFKRHDIIFKNLFL*FFDKQHI 356
           DVP+    LFF +  + S+  D    +   F  L  EEF+R+ ++ KN+   ++ K++I
Sbjct: 289 DVPENYEELFFTEPTEKSVALDVDKYDEDHFEKLMREEFQRNGVLIKNISKEYYQKENI 347


>UniRef50_Q2MI42 Cluster: Putative membrane protein ycf1; n=21;
           Magnoliophyta|Rep: Putative membrane protein ycf1 -
           Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
          Length = 1891

 Score = 37.1 bits (82), Expect = 0.53
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -3

Query: 586 SYIINYNKGTF*NCLAMLSDVPQKNNA--LFFKKKEKSSILFDFGNINVSFRDLNEEEFK 413
           SY+ N N G   NC   L D   +N    LF+ +K   S+LFD+   N  FR +    F+
Sbjct: 347 SYLNNNNTGNLENCKLQLLDKKNENQEQDLFWFQKPLVSLLFDYNRWNRPFRYIKNNRFE 406

Query: 412 R 410
           +
Sbjct: 407 Q 407


>UniRef50_Q64MS6 Cluster: Putative outer membrane protein probably
           involved in nutrient binding; n=4; Bacteroides|Rep:
           Putative outer membrane protein probably involved in
           nutrient binding - Bacteroides fragilis
          Length = 1173

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 142 NTSLLPGRSVLMQYTGWLSGGQLTVFLNSLP 234
           N +  P  SV  +Y GWLSGG     +NSLP
Sbjct: 773 NYAYFPTMSVSNKYNGWLSGGDYVTAINSLP 803


>UniRef50_Q7REU3 Cluster: Unnamed protein product-related; n=9;
           Plasmodium (Vinckeia)|Rep: Unnamed protein
           product-related - Plasmodium yoelii yoelii
          Length = 1011

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = -3

Query: 631 LDKNIY*NSHGLSIQSYIINYNKGTF*NCLAMLSDVPQKNNALFFKKKEKSSILFDFGNI 452
           ++ ++Y N +G  I + I+N         L +  D+P+     +F K  K SI+FD    
Sbjct: 185 INVDMYKNKYGEEIYNEIVN---------LYVKRDIPKNYEQKYFFKNVKKSIIFDIDKY 235

Query: 451 N-VSFRDLNEEEFKRHDIIFKNLFL*FFDKQHI 356
           N   F    +EEF  + ++   +   +++K++I
Sbjct: 236 NDEEFEKKIQEEFTNNGVLINTINKKYYNKKNI 268


>UniRef50_Q3LWC0 Cluster: Putative uncharacterized protein; n=2;
           Eukaryota|Rep: Putative uncharacterized protein -
           Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 784

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 517 KNNALFFKKKEKSSILFDFGNINVSFRDLNEEEFKRHDIIFKNL-FL*FFDKQHIF 353
           + N L  K     S+ FD  NIN  F D+NE+ FK    IF N+ FL  + K  +F
Sbjct: 672 EENLLLSKNTSNKSLFFD-ENINTLFLDMNEDAFKN---IFLNIRFLNVYQKNVLF 723


>UniRef50_Q9LM79 Cluster: F2D10.24; n=2; Arabidopsis thaliana|Rep:
           F2D10.24 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1119

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 757 SVFFFICMDKSEFSHKYF-WFNHRFYCFLSLAYRSHYAHRKGRLDKNIY*NSHGLSIQSY 581
           S F  +C  K  + H+   WF  +FY FLS+  +  Y +   +  KN+   S     Q+Y
Sbjct: 573 SAFLAVCRGKGPYEHQSMTWFVFKFYMFLSVELKRKY-NDTNKSSKNLLGGSEWYCQQAY 631


>UniRef50_Q7RAF7 Cluster: Kinesin motor domain, putative; n=5;
            Plasmodium (Vinckeia)|Rep: Kinesin motor domain, putative
            - Plasmodium yoelii yoelii
          Length = 1393

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = -3

Query: 532  SDVPQKNNALFFKKKEKSSILFD----FGNINVSFRDLNEEEFKRH-DIIFKNLF 383
            +DV   NN  + KKK K +IL       GN  +S  D++  E KR+ ++ FKNLF
Sbjct: 1245 NDVSSHNNVRYRKKKIKKNILNKNNNVLGNPYISNTDISYLETKRNANVFFKNLF 1299


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,667,427
Number of Sequences: 1657284
Number of extensions: 15439101
Number of successful extensions: 36207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36190
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)