Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e21
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   2.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   3.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.5  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   7.5  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   7.5  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   9.9  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 505 LFFKKKEKSSILFDFGNINVSFRDLNEEEFKRHDII 398
           LF KK E+ +I+FDF   N    DL  +E KR  ++
Sbjct: 222 LFIKKLEQCNIIFDF---NDPSSDLASKEIKREALL 254


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 117  GRDIALWYQHQSPPRP 164
            G  I LW  H+ PPRP
Sbjct: 1176 GNKILLWQNHERPPRP 1191


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 455  VTKVK*NRTFLFFLEKQCIIFLRDVRKHS 541
            V +V+  R F +++ ++ I+FLRD+ K +
Sbjct: 1864 VHEVERVRGFAYYMSQKAIVFLRDLEKRT 1892


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 378 YKNRFLKIISCLLNSSSFRSRNETLMLPKSNKIELFSFFLKNNALFF 518
           + NR  +IIS  LN  +F      L     N + L + F  N  +FF
Sbjct: 37  FSNRLYEIISIALNPCNFSKSLFWLRKKIKNSVLLKTSFDSNETIFF 83


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 342 PHQLKICCLSKNYKNRFLKIISCLLNSSSFRSRNETL-MLPKS 467
           P+ + +  +SKNYK+  L I+  +   SS    N    +LPK+
Sbjct: 765 PYYMLLAEISKNYKSGSLNILDFITKYSSRLDLNRVFPLLPKN 807


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 772 HFFPYSVFFFICMDKSEFSHKYFWFNHRFYCFLSLAYRSHYAHRKGRLD 626
           H  P+    F   D+   SH+Y +  +     L   Y+S Y + K R D
Sbjct: 485 HRAPHLALHFRNTDRRMNSHRYPFLYYPEVYILHGGYKSFYENHKNRCD 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,857
Number of Sequences: 5004
Number of extensions: 70026
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)