Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e21
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0036 - 27226777-27227103                                         31   1.1  
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445...    29   5.9  
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346...    28   7.8  

>05_07_0036 - 27226777-27227103
          Length = 108

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 90  ALRGYVSVTGRDIALWYQHQSPPRPLCANAIHGVAVWWPTHGIPKLITPFIKRV*LPIRF 269
           AL G +++ G  + +W     PP     +A+ G  +W     I  L++P+  +   P+  
Sbjct: 22  ALYGLLALLGASVVVWSVAGKPPAAHAGHALAGFLLWL-LGMIALLLSPYAAQPLFPVAT 80

Query: 270 AENLA 284
             NLA
Sbjct: 81  TANLA 85


>05_07_0360 +
           29542854-29542900,29542988-29543129,29543207-29544529,
           29544642-29544715,29545850-29545964,29546682-29546714
          Length = 577

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 192 AVWWPTHGIPKLITPFIKRV*LPIRFAENLA 284
           A+W P   +   + P ++ + LP+RFA +LA
Sbjct: 421 ALWAPLDAVLDCLNPLVQALLLPLRFAASLA 451


>07_01_0456 -
           3461827-3462261,3462542-3462670,3462777-3462897,
           3463004-3463086,3463087-3463124,3463219-3464153,
           3464407-3464655,3464738-3465195,3465793-3465885,
           3466402-3466650
          Length = 929

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 209 SWPPDSHPVY---CISTERPGRRLVLVPQSNISPC 114
           ++P  SHP+    C++  R G R  ++P S I+ C
Sbjct: 115 NFPSSSHPLIGHMCVTFRRTGDRFGMIPMSAIAAC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,225,003
Number of Sequences: 37544
Number of extensions: 382702
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)