Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10e20
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   239   8e-64
U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    31   0.61 
Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    27   5.7  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    27   7.6  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    27   7.6  
Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    27   10.0 

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  239 bits (585), Expect = 8e-64
 Identities = 108/146 (73%), Positives = 130/146 (89%)
 Frame = -3

Query: 438 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
            QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK  LPP WKYES TA
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYESGTA 146


>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/44 (31%), Positives = 29/44 (65%)
 Frame = -3

Query: 492 LDSLVVVVRSAI**KAANMGRMHAPGKGISQSALPYRRSVPTWL 361
           LD++V+ V+++I    A + RMH   +G+++S  PY + + T++
Sbjct: 443 LDAIVIEVKNSI---RAIVARMHVETRGMTKSVAPYMQELLTYI 483


>Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical
           protein F38C2.6 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 409 YLPVGAALPPQ-CP-YLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKI 245
           YL V A LP   CP +  E D +R      QTWK G+   T  C A    +S P  I
Sbjct: 93  YLAVKADLPNNTCPAFPFETDIKR---PGNQTWKSGNGWTTRLCKAGWTLFSRPDSI 146


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 331 NLQTWKEGSHSLTNWCNAEGFTW 263
           N++TW +    LTN  NA G  W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 331 NLQTWKEGSHSLTNWCNAEGFTW 263
           N++TW +    LTN  NA G  W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 367 LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKD 227
           +V   C  C  T L   + G+H L+    A G++  CP  I N + +
Sbjct: 91  IVSFTCPYCNITGLTERQFGTHVLSQHPEAPGYSVICPLCIGNTEME 137


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 77  GFTDWPVITKLRVCFLLTG 21
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 77  GFTDWPVITKLRVCFLLTG 21
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


>Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical
           protein Y48E1B.8 protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 373 PYLVEIDCRRCKGTNL-QTWKEGSHSLT--NWCNAEGFTWSCPSKIRN 239
           PYL+++DC    GT L Q  + G H +     CN E  + S  S++ N
Sbjct: 283 PYLLQLDCETNGGTKLMQLGRYGFHFVNPDGTCNNEKIS-SAKSRMEN 329


>Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical
           protein ZK39.3 protein.
          Length = 213

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 343 CKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDP 224
           C  TN  TW +GS S T      GF W       +++K P
Sbjct: 125 CTATNSFTWTDGSTSGT-----AGFVWDSRQPDNDYKKQP 159


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 183 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 58
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 183 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 58
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 207 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 61
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 207 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 61
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 183 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 58
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,395
Number of Sequences: 27780
Number of extensions: 233865
Number of successful extensions: 534
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)